LOCUS AFM04946.1 1591 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 subtilisin-like serine
protease protein.
ACCESSION CP003345-2434
PROTEIN_ID AFM04946.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_2582"
/note="PFAM: PKD domain; Subtilase family; TIGRFAM: Por
secretion system C-terminal sorting domain"
/transl_table=11
/db_xref="InterPro:IPR000209"
/db_xref="InterPro:IPR000601"
/db_xref="InterPro:IPR015500"
/db_xref="InterPro:IPR022398"
BEGIN
1 MYINLPKVNK NIFLLVTTIV CLLFFLLPIS SIAQYLPDNF EDIKPLENKL MVKIKSNTVN
61 KLEQASASFK AKKVERRFNL PSVDTKQLST KKISATTVRL QDWYEIEISA SSTVQEAIHY
121 YQSQDFVEYA EPIYPNYILA PPYIPNDTSI SLQWQLYVGQ LYAAWGLHKG DTNTVIGIVD
181 TGVNYNHTQL KNQIQVNYAE KYGQIGVDDD NNGFIDDSLG YSFGYMNPNV ADYQGHGTGV
241 AGMAAATTDD GLGIAGTSFN CRILPVGVIS SSYQIINMYD GILYAAENGC KVINVSIGRP
301 NLGFQWEQDV IDYVTLVKDV LVVAAAGNTP QELDFYPASY KHVLSVANSD GADNRYSTAT
361 FSNYIDVMAP GARVLTANAN GSQTYAWGSS YSSPFVAGIA GLVRSAFPNL SADQAGELIR
421 ITADDKYSQS ANAPFFEKLG TGRVNAFRAL SEESSAKAIR MDNFSYFGRN GQAAFSGDTI
481 TLEADFINYL NPITQNGKII ISSSSPNIRV LDSVFDIGEM TTLQQKNNAS SPFRFIVNQD
541 APLDLDVKFR LGFSDTDYSD YQYFSIPINA PYLAIPFNTI NFTLTGNGRA AYYDIYNRLG
601 GGVKSNNSQT LQEGGLIIGK SATNVSDNVL TNMSGIVKDD DLKMIDIPRI TEKTPFFTKA
661 TSEFADTLGA IIPPVGVHVR HTVKGRTNTP HHQYIILEYE FTNISGAVMD SMNVGLYYDW
721 NLGDYTRNFA DWDNAREFGY VFGAGTSGYA GIKAISDNKT YFALDFQNVG GDNINVNDGF
781 TSAEKYQSVS TGISRKRAGF NIGGGDVAHT VGTVLHNFGI NETRKVTFVV MIAPTLAALR
841 DAHDAAVLAT DPLSSISPTP VVNNTLCENT SYTITPQGGT NFRLYDIANT QIPIQSGTSF
901 TLTPADLGRV FYVTNTDSVL EGDYTTLRFS TRTAIADFIS PAQLNLDEFN SIRLQDASQN
961 AVSWLWNFGN GQTSTSQNPF ITYSSQGSYT VSLTITDIAG CTSTISKVIQ AVRKSPKPII
1021 STVSKQSCDD VPIEIRPLAN GTNFKFYNTQ NQLLATGRSY VVAAKSLDSL YVSNIDSLLE
1081 SDKVLVKIQW VQLEASFVAS PRYDTLLYDN VLFHNTSSSD FFFQSTTWDF GDGSPTQTGV
1141 TKRHTYSTQG RYKVKMTVTN DFDCSKTIEK WFYVGKVSPR PSIASSIKVC KGESVTIRPD
1201 GGTLFNFYSK LDSLPIAQGR EISFNSNSNI PSILYIKGAD SLIESDPVST RLEIVRVIPN
1261 FDFPRELYLD EQTTVRFTDN TSGATSWLWN FGDGTTSTER TPSHTYNAQG DYIVTLTVRT
1321 PAGCQGTASK SLVVFRHSPR PIVNDLFVCR YDSTTIVPQG GTLYNFYNSA TNDQPIHTGR
1381 VYNLGFISQP KDIWVTNLDS TLESPAVKVH IDFSRPSSDF EMSAINDTLN IFKQDTLFLE
1441 DRSNGAVWWY WNFGNEEIAT TQTAQTIYKQ EGEYQVILIT RDSLGCIDSL SRNLVVIDTP
1501 VITGGDSNTD YQILVYPNPA SDYLNTYIEL ETSDEISIKI YNSLGQELMT TSKEQITKKR
1561 FVFDVRKFSK GLYYVQVIMS DKVISKKVIL E
//