LOCUS AFM04913.1 1078 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 signal transduction histidine
kinase protein.
ACCESSION CP003345-2401
PROTEIN_ID AFM04913.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_2548"
/note="PFAM: Y_Y_Y domain; Two component regulator
propeller; Histidine kinase-, DNA gyrase B-, and
HSP90-like ATPase; His Kinase A (phosphoacceptor) domain"
/transl_table=11
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="InterPro:IPR009082"
/db_xref="InterPro:IPR011042"
/db_xref="InterPro:IPR011110"
/db_xref="InterPro:IPR011123"
BEGIN
1 MNSFDSCAKY YYMKHSILYI FLLPLLFFTQ YSFSQSIGLR HYDVDEGLPQ GDIYGMAQDK
61 NGFLWVATGN GLARFDGHDM QPFTQSDGLA DNFITTLATD SIRNGAWLGH PQGLLSYHDR
121 QTDSIWVVTS LAQNLLSRIQ QIYIEEEQIW ALTEREGVFK VSFNNENQTN ESQKNFNYQT
181 SYFPLVSTHT ERCNVFEKLS SNEFLVGTDS GLFVASLKDE KFIFTQQIKA LKGIQIHSIT
241 RKKQAQIGFW IGTKDNGIYN FFSNNNVKKA FSSRTEIANQ YITSILEDKR GKLWIGTKNN
301 GLFRVESTKK DEKVVSIEHY TPKNGLPSSA ISCILQDYEG SIWIGTGNNG LVQMLNEMFE
361 IYTYTHGLAS ENILSTLRLD ENILLLGTEQ NIISLTKQGD STVFKPYLNA LHQTTVRTLF
421 KDYLGKIWIG TEKKGLFTYD PATNFLKSIR DVPDKTINKI TADDNGNIWI ATNSWGLFKY
481 IKSENRFTQI LPTKTVQLNR IQNIYKDRQN RIWIASSDYT LSYWKDDKLT VLDAISEFSQ
541 VKATCFAEDA ENTLWIGSEG SGIFAYSESG IEKYTTANGL ASNYSYFIAA DRNYNIWIGS
601 RKGITRLRPK DDLAKIYHQS DGLIGTEANR SAVEKDFNGD LWFGTTRGLI HYIGQNDHIN
661 LVRPKVVLSG FRIFGDEQNF EENLVLPYND YSLRFDFKTI TFRYPDKVKF KYRLKGFDKN
721 WSEIMTQNFA YYSHLEDGNY SFEVLATNDD GIWAKIPAIY SFKIATPIWK KSWFLTICTL
781 IGFIVLVGYV RLRTNSLEKK RRDLELEVTK QTNKLKIQNK ELALTNSLLK ESENELSQSN
841 SIKDRMFSII SHDLRAPLAT LQNFLKMFIS YRNAFTDEEI GKITKDINKS LGNVGDLLEN
901 LLQWSRAQMG HLETQLEPLL ITDHIQKNIE LLLPTAKNKK INLQVSEIED NILVEADANL
961 LNFILRNLIG NAIKFTDIGG TVTVGAMFIT SNDKNAHKTI HIWVRDTGMG MSDEVAKKIF
1021 ITDQHVTTRG TANEKGTGLG LMVCKEFVEK QNGKIWVESI EKQGTTFTFS MKEGKIKE
//