LOCUS AFM04853.1 1303 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 signal transduction histidine
kinase protein.
ACCESSION CP003345-2341
PROTEIN_ID AFM04853.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_2488"
/note="PFAM: HAMP domain; Response regulator receiver
domain; Histidine kinase-, DNA gyrase B-, and HSP90-like
ATPase; His Kinase A (phosphoacceptor) domain"
/transl_table=11
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="InterPro:IPR009082"
/db_xref="InterPro:IPR011006"
BEGIN
1 MKWFNSLKLS LKITFSFLII TVVVAVMSGF TLKSLEDLRK RSQEVSEVHF EGLRLLTHIA
61 EAYPMMLVKT RDVILSETLT QRKQYAQEIT KDQQNIDKWT EELVSKLPSE EEQELYKKYT
121 KALQEFQLLR ITALGLAIDE QELQQSRDLI YGDLNKKAED LKNTLDNLIQ TKEKIAQQVQ
181 EDNDQVVQVA YIRLGILGVI VLIITFLIPV WIKRQISSPI EIMEEKAAQV ALGDLENVEL
241 KLKGRNDEIG KLGQSFNEIA KSLGQIVRKA NQISQGNYDV QLNVRGEKDD LSIALNEMTL
301 SLRNQYYLKE GANKLNDLLS GHFTSKEVGE KSISFLGEFL EVGCAVLYIY NEENKKLKLY
361 SSYAFTERDN LSNEYSLEEG VVGQVAYERK PIMLKNIPNN SQHITTGTIS QTPSVTYTFP
421 LLYETEICGV IELASFEPFT ELKKQLITNS ADLISSHLYS ALQSERIKNL FEVAQAAKRE
481 AQTKAKEIEK ANELLKEKQM HVQQQSEELQ QQNEEMQQQA EELQQTNEEL QQQQEQLEGQ
541 RTELQIRNEQ LTVIQTDLEE KAEELERASK YKSEFLANMS HELRTPLNSI ILLSDMLRRN
601 SSKNLSEKEV QKCSIVYQSG NDLLNLINDI LDISKIEAGK MSVNIYHFHT AELLSHLKPL
661 FDEMARQKKL DFVVDDQLGI ELFNDRDKIS QVLKNFLSNA FKFTKKGSVT IRISKSNHDK
721 LPVKISVIDS GIGIPQNKQK VIFEAFQQVD GSVSREFGGT GLGLSIAREL TNMLGGEVHL
781 SSEHGKGSEF YMLLPIENHI EEEDAKKRKL DVVYDKKRKP QLRSNASDVA EVKEKAAERR
841 FKRVAQLAVE DDRETAQEND DIILIVEDNV DYANSLVEIS RGLGFKSIIA VSGKEFWEDV
901 EYYNPLGVLL DLGLPDITGS ELLEQIKTKP KYRHIPITIV SAKDRNIELL EKGAIGYLQK
961 PIEAKAVRDE VLRLTGISHK ATKQMLIVED DEFQQNYLLE LFDKEGVVCK GVTTETAAKR
1021 ELETGNYDIV IADLKLEKGT GMGLCRFIKE HNLNIPVIIY TGKDLTTSEK EEMRLYSVSV
1081 IIKHPQAYTQ LLEKAKMFLH QVYEKNPIKK VTQDSTNNGN QSQSEIQTTE TETSNFAERD
1141 NSNDHFNKAT SEDFDSIVNK SLESYLADEA DEANSDDLRG KRILIVDDDI RNVFVMTSAL
1201 ENHDADIIEA FNGKEALEIL EEETVDLILM DIMMPIMNGF ETIENIRKQD KWKDLPIIAV
1261 TAKAQDEDRI KCLEVGANDY MTKPVDYTIL MKLIKKHLNK QKA
//