LOCUS AFM04848.1 1012 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 ATPase involved in DNA repair protein. ACCESSION CP003345-2336 PROTEIN_ID AFM04848.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_2483" /note="TIGRFAM: exonuclease SbcC" /transl_table=11 BEGIN 1 MFPLSLSING LYSYKKKHVI KFDTLSEAGV FGVFGKVGSG KSSILEAITF AIFGKTDKLN 61 ISGDNRYYNM MNLDSDIVEI SFEFLAGKEK EHFLCEFIAK RNSKKFDTVT NYNRKAAKKV 121 NGDWQTIEFN EVEKAIGLSY DNFKRTVIIP QGQFAEFLQL TATPRIDMIK DIFSLHEYDL 181 SKNTKTLLDE IKKQIEIDES IILHRFEYLT EDFIQNKKIE IESLNQIISE QETQINQKNE 241 QKSQLEIIKT IFEEKNKKQI ELQKLQAKEE NIKNKETNLN QFILIKNQFE QDLKDQKRIT 301 INLNSIKEKH KNTEQNYSKV QKNYEKIVEL QKEIFIQKEE NTKKLEQIEP INHLIKLKEA 361 QVKINEKNVS IEKGTKMTLE KKEEFQIIKS AINKEKNTIA EFKSEIIDTE ILQNAFIWFD 421 KNESLAKNNS EINIEVENTK SELEKIEIEK ATFETNKLQL SEKEITQSIE RKNQEIEKLT 481 MQKGLHQAVH SLENGEPCPV CGSESHPDIL DVENIDSNLR SLKKQKKDDE QNLKTLQKRE 541 IELARFLEKI DEKKQTLDKQ IQKQLLIKTE FEIHQKLFLE KEWKNLSKTE ILNIQDEQKI 601 IQTQIKKSEM SLFELEQKLE KITIEIEKYK QRLEFLKHEY ALQTGQIKEL ERNSEKITQI 661 YINSSIQELE NTIVEIKKSA ELSEQKFLKN QEQEKQFFHQ KSELEGTLKS ILSQLSTLNQ 721 ELESNQKQVL QKIEKLNQDS ELKPLSQNEI ENILNQKINT DNERKEITAF FTNLKTTLED 781 YQKLEQQTAG KSYENDSFEK LVKEIKELTN KQKQDNSQQI IISQEIKKAE KDTLEKADLT 841 QKLSKLLQRQ DNLQTLAKLF KGNSFVDFAS TEYLRNLCQL ANIRFRELTH HSLELILNEK 901 NEFEVRDFLS EGKTRAIKTL SGGQLFQASL CVALALSESM RKQQEFFFID EGFGSLDNDS 961 LQIVLTTLQS LQKENKVVGI ISHVESLQQE IRTHLHIQKN QTDGSFIKLV AG //