LOCUS AFM04812.1 817 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 capsular exopolysaccharide biosynthesis protein protein. ACCESSION CP003345-2300 PROTEIN_ID AFM04812.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_2446" /note="PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family" /transl_table=11 /db_xref="InterPro:IPR002586" /db_xref="InterPro:IPR003856" BEGIN 1 MDIQQDVTTI SSDSNANGQI MTNRQNAQSM LSNSNNDAFD PKKIIYTLWK SKFFIIFCIG 61 IAISIAWWKT YYATPIYTIG ASLQVKDNRK ASSPASLLYS QDMFGGSKRL SAEMKFIRSY 121 PFIKRVCEKM DMRVYYYQEG NIRTSEIYPS KNAPFEVIIN IDADSNLVEL PNYKIKFEDE 181 KTFLLVNSQE EWDNARSYKF GETISESSTT FKVLNKNLIK GTIYGFHFTN PSSLARNFLG 241 RLSAYAEEDA SLIRLNLISS VPERANNFIT TVMQEYIAYG LEDKNLEAVR TIDFIDGQLS 301 QIRDSLFLIE DKIQNFRSNN KFIVGDDAVG RNLEQYTSLE DENRKLQMKG KYLDYLIAYL 361 KDNDNYKGIT TPTAVGVEDG IANTLIGRLV DLQIQREVFL EKGSTKNPFL VEINIEIDKI 421 RESLLEHLNN VKSNDRIAAE DIKSRINTLN NQMNSLPSAE RKLVNINRLY TINEEIYILL 481 LNKRMEASIA QAAAREESQI LEPPFNYGAI SPNAKQNYLM ALILGLIIPI GLIYLRNYFR 541 NTIETLDEVK SISSVPILGV VMHSKKKKQG RNTPLVHEQP KSALAEAFRS IRSNLLFLMG 601 RIDKTSILMI SSSISGEGKS FCSANISISL ASTGKRTILI VADMRKPQMY VPMPNDEYSK 661 DGLSTYLIGS KNLDEVVQAT SVENLDIIHS GAVPPNPAEL LMGVVMDELI EELKKRYDYI 721 IIDTPPLGLV SDALILGKYA DASVYIVRQD RTPIEKLKGL ERIYSEQMLK NVGIVFNDVK 781 TQSVGVYGYG SYGGYGYYEV NDADLPWWKR FTNKVKK //