LOCUS AFM04784.1 890 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 DNA gyrase subunit A protein. ACCESSION CP003345-2272 PROTEIN_ID AFM04784.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_2417" /EC_number="5.99.1.3" /note="PFAM: DNA gyrase C-terminal domain, beta-propeller; DNA gyrase/topoisomerase IV, subunit A; TIGRFAM: DNA gyrase, A subunit" /transl_table=11 /db_xref="InterPro:IPR002205" /db_xref="InterPro:IPR006691" /db_xref="InterPro:IPR013757" /db_xref="InterPro:IPR013758" /db_xref="InterPro:IPR013760" /db_xref="InterPro:IPR020899" BEGIN 1 MADIENDSEE LLDDGNNNII PVSIEDEMRT AYIDYSMSVI VSRALPDVRD GLKPVHRRVL 61 YGMSDLGVYH NKAHKKSARI VGEVLGKYHP HGDSSVYETM VRMAQEWSLR YMLVDGQGNF 121 GSIDGDNAAA MRYTEARMQR LAEEMLADLN KEVVDFIPNF DDSLTEPSVL PGKLPNLLVN 181 GSSGIAVGMA TNMAPHNLTE VIDGIIEYIK NPEITVEELT KFVTAPDFPT GGIIYGYTGV 241 KKALETGRGR IVMRAVATIH TDKNNREQII VTEVPYQTNK ASLIEKTASM VNEKRIEGIS 301 AIRDESDRNG LRIVYDIKRD AMANVVLNQL FKYTGLQTSF SVNNVALVKG RPRICNLRDL 361 ISYYVEHRHE IVVRRTEYDL REANKRLHLL EGLLKALDVI DLVIATIRSS KDAEEARNVL 421 TGNGQMNTES RFFKDITVPS GFVFDFSEIQ AREILSMRLQ RLTGLERNKI QNEYDALVLT 481 VADYEDILAK VERRMQIITD ELLELREKYG DERRTQIVHS AEDIDIEDLI AEQEMVITIS 541 NEGYIKRTSL TEYKSQARGG KGSKGATTKA DDFAEHLFIA STHNYLLIFT DHGKVYWLKV 601 YAIPEGSKTS KGRPLQNLIS IESGEKVQAV INVKNFKDED YINNNNLIFC TKKGQIKKTI 661 LEAYSRPRQN GINAITINEG DALLDVRLTD GSNEIIMAVG SGRAIRFNES QVRPMGRTAS 721 GVRGISVKEG DEVIGMVCLS RPDSNLLVVS EKGYGKRSDI DAYRVIKRGG KGVTTLKITE 781 KTGALISIKE VIDTDHLMIS RKSGVMIRFA VSELRTMGRA TQGVRLINLA AGDQIASVAK 841 IEHIEEEELE KTTLEEGTEN IDGEATDLPT DENQTDNNDI PTDENSEDVE //