LOCUS AFM04630.1 966 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 putative Zn-dependent peptidase protein. ACCESSION CP003345-2118 PROTEIN_ID AFM04630.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_2253" /note="PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16)" /transl_table=11 /db_xref="InterPro:IPR007863" /db_xref="InterPro:IPR011237" /db_xref="InterPro:IPR011249" /db_xref="InterPro:IPR011765" BEGIN 1 MRKSFESYLK IGAFLALFLT TPFVYTTTNA QDTNISTTQE GFSPLDMVKS IPIDENVKVG 61 TLSNGVKYYI QKNAMPANRV ELRLAVNAGS ILEDEDQQGL AHFTEHMAFN GTTNFAKNDL 121 IDNLETMGVR FGADLNAYTS FDETVYMLPI PTDSVGYVDK GLLILKDWAS GILFQDEEID 181 KERGVVIEEW RRGKGAGERM RTQYWQTLLK DSQYAKRLPI GKKEILESFK YETIHNFYKK 241 WYRPDLMAIV AVGDINIEEM EAKIKETFGS IPRTKSAFPR PQFSIPFNKE PLAKVVSDKE 301 ATNTQLMLFY KFPKKTITNY SDLRVNYTQE LISTMLNARF GEVQKQAEPP FLYAYGFYSD 361 MIGRNLDAFQ IYAGLRENNI EGGIKTVTEE IERMKIFGFT ESELQRAKKQ LSKQYEKAYK 421 EEDKTESKRI VMKYVYNYLK NNPIPSPKFE YEFLQKALPM IDLNFINKTA QSWITQENRI 481 AILTSVKKEN IKLPTEKEVL SIWNNAPRGD IKPYEEKEIA TSLIEEANIP KKGSIKKEVK 541 NEKLGYTELT LSNGARVILK KTDFKNDEIL VSAYSMGGHS LYEDKDYIAV SNISSIISQS 601 GIGELSSSDM DKFMTGKTVR INPYISEHSE GMRGSTSPED LETALQLIHL YFTNPRQDKD 661 AVASFVATKK GFYQNLASNP NYYFYDQYSK LMESESIRSG FPKVEELEKT DWQAAYKMYN 721 ERFANASDFT FFFVGNFNDE KMKSLLETYI ATLPSTRETE NFKDLGTRSP KGMVEKIYKK 781 GSEPQSNVRL AFAGEMKEYN TKDEVALNVL AGLLRFKLIE KLREEKGGVY SAGAYTNVDK 841 YPVPNYSVMI TFPCAPENVD DLIAASIEEV DKLRDGDIDT SDLEKFKEVE KRKNEVAQTQ 901 NKYWLSTLQG IYYYSETPES IEKNKSILKD LTVEDVKKAA VKYLDTKAYI KAILLPETET 961 KEDKGE //