LOCUS AFM04599.1 719 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 GAF domain-containing protein protein. ACCESSION CP003345-2087 PROTEIN_ID AFM04599.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_2221" /note="PFAM: HAMP domain" /transl_table=11 /db_xref="InterPro:IPR003660" BEGIN 1 MNIKHLKISQ KLAILFSGLF VMLLLHYFLV FKLDANILDD GTKLDIAQRN GMAIQQAIFY 61 LRNVVDGNHQ TDLNDLSNRV SLINSNLDIL QNGGVYTARF NEEIEVKAIE KDINTQLLAF 121 KRLWKDFDRR FTKIRTTSQL HHDSLLVYYI AETTSSSLQF PVEEDLFSLG SLGNLDGGLD 181 DLGDLSLSFD NNNTNTALST NYRKVEYQFD NILNGSIVPD VNFIIRNTEK LILLNKNLEN 241 SLSTRLHYDQ VRLRYWMVAL FLINAIVIGV GYWFVVKTSL HPLLKIRQLI NRLAAGDISR 301 TLLARSHDEV GSLIQDLSRF SQGLEHITDF ATQVGKGNFD ENFEVRSKKD KLGYALLEMR 361 NDLKQNSEED KKRNWTNEGT AKFSDILRQH AQDMEALSYQ LISNLVHYLG ANQGGIYSLE 421 KEGNENDAKA NLVLKAAYAY NKQKFINQSI PVEQGLLGQA VMEKGHLYFN QISSDYIRLT 481 SGLGEATPSY LLIVPLISND EVHGVIEIAS FKPIEKYQLS FVIKLSESIA ATLSNVRSNE 541 RTKLLLEESQ MYAEQMRAQE EEMRQSMEEL TTTQEELERI QGSLKERLTN YEAVVNSTKS 601 MILALDGEYN IKVLNRSYAA MLRRLKGTEV PNGSNILEIL TQEQLEYWKP HYERALGGES 661 FTMVSNIKNS EFEDVYYELE FFPLIATSGI ITGFAIVNRE VTSLNPVRFT EYDNIIPIV //