LOCUS AFM04556.1 1342 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 putative periplasmic ligand- binding sensor domain protein protein. ACCESSION CP003345-2044 PROTEIN_ID AFM04556.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_2177" /note="PFAM: Y_Y_Y domain; Two component regulator propeller; Stage II sporulation protein E (SpoIIE)" /transl_table=11 /db_xref="InterPro:IPR010822" /db_xref="InterPro:IPR011042" /db_xref="InterPro:IPR011110" /db_xref="InterPro:IPR011123" /db_xref="InterPro:IPR015943" BEGIN 1 MRYACTLFCV IIYSFSVHFN FSFAQFTDFG DTPLEAEHLN IEQGLSQSTV LSILQDQKGF 61 MWFGTNDGLN RYDAYKFKIF KSQRADSTSL PDNNIQTLFQ SKDGTIWIGT EAGFSKYNLD 121 FDNFTNYSYQ AKNKKSLSND DVSAISEDTT GIIWVGTKNG LNKFDRKTKE FTRFYADGKT 181 GSIPSNNITA IHTDKKGNIW IGTQNGVARY QPKTNNFKVF LADSTFSSLP NGHVTCFFED 241 RFKALWIGTK NGIGRYNRLG DNISQYKASP SGIEAIEQDE NGDLWIISVS ELGKFNQNNH 301 TYKRQNIGNT FENYGSFTSM TKSKSGLLWI GTNKNGVFKV NTRTKQFKTF RHNAENPYSL 361 PPAWVWSIDD SDKKNLWVGT ADGWSYLNVA KDSAFNYSTF FSSFQNPSNR DITALLNVGD 421 SVLWGAVINN GIFRATLDKQ THIPLEFQTF TENKNDSLNS SPSGNIIYTM YKDSYNKIWI 481 GTLGRGLNEV YEDTTGNYLI NLNKQKTNEW NNNKTEKPIL KKYKFRYFIH TKNDKKSLAG 541 NSVRVIFEDR NRNLWIGTEE GGLSLAKRDN LGNIISFENY SYKDNEPTSI SSNAIRTIWE 601 DESGYLWLGT PNGLNHFDPK TKKALHFGEL DPKLSRVIHG ILGDKKENLW LSTNNGILKF 661 DIGDSIVWEF NVEDGIQSNE FNSGASHLRK SDGMMFFGGI GGLTMFHPDT VKSNTYLPPV 721 VLTDFKIFNK SVLVRDENNE KSPLTHHISV VDEIILNYED QVITFEFTAL NFLHPENNRY 781 SYRLEGFEEN WNEVNDRRFA SYTNLPKGEY KFVVRAANND GLWNNEGASV KIRMRPPFWA 841 TWGFRIAVVL LIASGFWVIY YFRTKSIREQ NVKLENSVKE RTGELLETTE ELRVQRDQLE 901 NAYANIRLLS DIGREITARL DHKEIIQSVY DNIQNVMPAD AFGVALFDEE ANYLTVSGFI 961 ENGNVLPFHV LDLNDKSELA VKSFNEQREI IIHNIQQEYL KYMEEKPNPS FGKTTTSVVY 1021 LPLVLAERKI GVVTVQSYKE NAFDTTHLSI LRNLATYIVI ALDNSQAYTK IEAQKHEIDE 1081 NRIVLQHKNK DITDSINYAK RIQHALLPPL SILKDAFEAF VLFLPRDIVS GDFYWFTEIN 1141 GKTIVAAIDC TGHGVPGAFM SIIAETHLDR IVNVMRVVSP ALILNELDKA VKSTLRQNET 1201 QSRDGMDMSI CVIDKQNQTV TFAGAKNPLI CISKKGVNQL KGDIRGIGGY SRRYLKKTPT 1261 FTEHVIQVTE PTSFYIFSDG YQDQFGGKHD EKFMKKRFRQ VLRDIHAEDM DAQKQLLERG 1321 FMRWKGQRQQ IDDVLVIGFK MG //