LOCUS AFM04555.1 1449 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 fibronectin type III domain-
containing protein protein.
ACCESSION CP003345-2043
PROTEIN_ID AFM04555.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_2176"
/note="PFAM: Fibronectin type III domain; TIGRFAM: Por
secretion system C-terminal sorting domain"
/transl_table=11
/db_xref="InterPro:IPR003961"
/db_xref="InterPro:IPR008957"
/db_xref="InterPro:IPR013783"
BEGIN
1 MYLTLQNPKT RILNALKVGW SAILFIALWL GISLSVWAQP AYDLTAVSGT FTPITGGTDV
61 NGIEVDTGLS GVLPIGFTFT YDGVPYTDFK ASSNGFLTFG VATTASGTTN DLDDDSFSTN
121 SMYPVLAPLW DDLDGGDAVG AKAAYVLTGT APNRVLTMEW LNWQWTYSSS TPVISFQVKL
181 YEATGVIEYI YRQDAGAVAG FFPGASIGLT SVHTGTTVDF ISLEDVSAAP TTSSTFETTT
241 LITKPATGQI YRWTPKLFTT NPTDNATLVA PDANLVVTFA SGTPTIGTGN IEIKKTSDNS
301 VVETITLPSA QVTVTGRVVT VNPSILLDCN TEYYVNIPAS AVTGVTGFTG ITNMTDWSFT
361 TTNACYTLAP ADNATDVALD ASPTMTFLFG TVAIGTGTIE LRKTTGGTLV ESFVLPSAQV
421 TVTGNVVTVD PTNILDCNTE YYLTVPATAV SGAGFTGITS TTAWSFTTTT PTLGGYTHTS
481 IPVNFEAIAT TGTVVTAFSG GDGISSSAIT MPMAFSYFGA SYTQLKIGVD GWITLDASQT
541 GGDFSNSTIP NVDGPPLMIA PFWDDLDAHS TGTVAYKDMG TYFLVSFEEV ERWLENSTNS
601 FQIKLFYATG IIEFHYGTFN TTALDRATVG IENATETSGL LINYNGTGDA LGSDIAFRIT
661 PPVAVLPLTA TFTPTNGATG VAPNSNLVLN FNYPVSAGTG NIEIVNTTTN AVLETIPVGD
721 ARVDYSTVGQ VTINPATDFP YGVIAVRFPT GAFKSCNNID VTGITNTTDW RFTVSDPCAA
781 IVIDAGPNQS GITSGSNVTL AGVAATGGSG TYTYAWTPVV GLNDPTILAP TATITSNVTY
841 TLTVTDVTAN CTKSDNVSIS VAAPTGGGGG GGGGGSTSPV TAPFLRLTST GSTTMTLDWV
901 GGSNAEGYTI FRKNNTADNF TRVSSVTASV TTFSDSLLVP NTRYSYYIQA VRGSSIANSN
961 TVFDYTYPSI PTVASFENAC VGTGAQFTVR GSSGVYNVYS DETGGTAITT GDSTGVITTP
1021 TFADATTFYI SAVGSRYEST PRVAVSVITR PLPTSTMLGA DLQESCTDSL TIMAEAVDGA
1081 TYTWYSLNSP IATTSTPMYT VDRSGVYSVL VNRDGCVARS NTVRVRVNRV TPAEIRGLAN
1141 REFCEVGILE AVETEGATYE WLLNNAVVGT GSSLEVSQSG TYTVSVTSAL GCTLTSSSVT
1201 VSVISVPQLD LQTSAPDFCE GTEGVELSVN AVNGASYEWL RNGRRIRTTS TPSLQVNVGA
1261 EYRVRVVLNG TCSRTSDAVM VTRNAAPAAS VRVYGDSIKV VYVGNVDIAS VTWTKDDAPF
1321 SATTQAFAPT ESGIYTATVT YSTGCQVVSS GIQYIKPPVV VIVGEEEVEA LGFMLFPNPT
1381 TSKVNLNFGD AFKGDITLTL TDAIGRTIQV TKVKASENAT IDLSKVANGN YMLTIASDDK
1441 VVTRKIIRE
//