LOCUS AFM04524.1 1059 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 DMT(drug/metabolite transporter) superfamily permease protein. ACCESSION CP003345-2012 PROTEIN_ID AFM04524.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_2143" /note="PFAM: Protein of unknown function (DUF2723)" /transl_table=11 /db_xref="InterPro:IPR013026" /db_xref="InterPro:IPR019734" /db_xref="InterPro:IPR021280" BEGIN 1 MGFNRLNTIV GWLIFLIATT VYVLTLENTA SFWDCGEFIA VSYKLMAPHP PGAPFFLLVG 61 RIFSLFALGD VLEVAFWINM LSALCSSFSI LFLFWTITML ARRIVRPSLQ KVMDAKTEKD 121 LKQGLEAQEN DYTLAQKIMV LGSGAIGALA YTFSDSFWFS AAEAEVYGMS SFFTAIVVWA 181 IFKWERIDDE RDSNRWLIFI AYLVGLSIGV HLLNLLALPA LAYVYYFKKY KTESRLGWIM 241 TFLAGTGIVV LITYGVIPGL PTIAAKFEVA FVNTFGLPFG SGALFFAIAF VAALVWGIIY 301 SIKKQNVPLN TALISFAFIM IGYSTYSLIL IRSNADTPIN ENSPKDIMSF VSYLKREQYG 361 DRPLVYGRTF ASERTGQDIG AAIYRKGEEK YEAFDHKFKV TYDPKGNMLM PRIYSQSGNH 421 PQLYKEKLNL QDGERPTFVD NVKFLFSYQF GHMYFRYFMW NFAGRQGDDK EVGWLHPFED 481 LGKELPVDLA TNKARDNFYM LPLILGIIGF IFQANKDQKG WWVTFLIFFI MGIGLVLYLN 541 SPPVEPRERD YVYVGSFYAF SIWIGLGMLA IAEFLRKYTS GMAASSTALA VAMIIPTIMG 601 VKGWDNHNRT GRYLSVDQAR NTLAACEPNA ILFTGGDNDT FPLWYVQDVE GFRTDVRVAV 661 LSYFATDWYA DQMTSKVNDS EPIPISLERK DYIQGKNDYL PYVGSRDGSE DKNINQPVNL 721 ETYIELLKKQ DPRVMVQLQD GSSTGKLLSK KFALAIDKQD VLSKGFIPKG KENRIVDVME 781 FDIKGNNIYK NDLLLLDLIA TNKWERPIYF NQTSANTINF NLREYLQMDG MVYRLMPIAA 841 QDNGDLGEVN FEEMKKAVDE FQFRGMQTEG YYDDEYKKFG AQFRQVYFRL AQEYFERGDK 901 EKAVETMDKA FEQLPVMNVP YSYYEPYFVQ LYHMAEADDK AIALAEDISS RAMGNLNFVY 961 SNNLNQFNYS DMVQRSSIQM RVLMQVYRQL DAMTTQEIQR LEAKKSIMKE EGKVVVDNDG 1021 NEVKLEFSDT DQTRLDSLKK RQAIFTDAIQ KYSAAGGMQ //