LOCUS AFM04449.1 1177 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 hypothetical protein protein. ACCESSION CP003345-1937 PROTEIN_ID AFM04449.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_2066" /transl_table=11 BEGIN 1 MNKNLFIYSF KYLAVLLALV TFSSCERDEF TEQDAFDLQQ AQLDAETARE EAALAAQDKR 61 VMDMAMFRRS MDSLTRLNSG GKVFYTVNVV PGGSSAFSSG RFEEVEGLDG ATVTVSQLGG 121 SVVEQKTTVG GLASFEMYSG EVTVNVEAAN HTDLNYTANL TPDGGVPNGA LMYVGNVVPV 181 FDDPNNPAAG SEENLATVKG FAFAELDITG GNNFEESVPD GTKVRAFIDV ANPAFKAKYI 241 DQANDEGVNN GGQPTASGAI QRFAYEEAAS TTGSTVTSAL NNDTAPDGGE YSITIGATAS 301 GLPITMKFDD FAADRTYLFG DPFGFAFFTG SDDNDTGFGP GQKRFIYTQN TELVGGVANQ 361 APTALPFQGA VDLAQLSNVI FDFATTEATA TATITGGDAV RTVAISTTEN WLYTGNGTSA 421 NVTGEIADTY LGDANRGSYL TTPTVVFSAP TAAGGVTATG VAIMSERGEG EATVDTDGVA 481 GGTTNDLRSV IGVKVTNPGS GYAAAPTVTF VRNSFTGKTA DVPNANGIGT IVNTQSGIGY 541 VEIIDGGFGY TDVGGAVTFS GAGNSTGVNP AALFNNSADP VGQVPTGGTA AAATVVVDRT 601 IGTVTQVDIP AGSSGSGYTD PIVTIANGSS LSLGDNNENA PQVDGGNTIV LFETNGAGGL 661 RFANGLTTFA DNDADLTNGL EDPGTGLRLQ QTAIDYALVP NVVTNGTVAT INFDGAGAPA 721 AGFELPEVRA RVNNLGQITE LFISNPGSGF GNVDAVAISG ITVSIEPIGV RATANAFVSS 781 GGGIGNYVIN NYGTPSSIYS TTLGTNFNYV SATNNGGVQE FRDKANAVVA AADVAANSDY 841 IVAFAAPAAG GTAATGYPVF EQDGSNLVGV YVSSAGSGYA AGETPNFWVI PAGLSLDEYK 901 YGTVVSSANT NNASATATLV DTRLTLTFTD GGLGYAIRPE FVISGGNKSA EDLAGINSAI 961 NGTIRGELDF NGAGSITNTS VEYTGALPFT AADLAAEPIA VTISSDRLAA KLTTEANGTG 1021 NFNGFILVSA AANGIDYAAD VEYDINGLDA SAKDFFNAVE SGEFTNDERV GSNGVTNANL 1081 KYITAPTFTV DFLGLNTGGA GVATLDVEAD ITALTNTTVG SLPSGLVFSS FIYGGNDTSY 1141 NPAGERFRTI GGSSSFEVFS GLTYIRDVNY GTGIELE //