LOCUS AFM04368.1 806 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 7TM-containing protein possibly involved in signal transduction protein. ACCESSION CP003345-1856 PROTEIN_ID AFM04368.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_1983" /note="PFAM: 7TM diverse intracellular signalling; 7TMR-DISM extracellular 2; Stage II sporulation protein E (SpoIIE)" /transl_table=11 /db_xref="InterPro:IPR010822" /db_xref="InterPro:IPR011622" /db_xref="InterPro:IPR011623" BEGIN 1 MPKGFLSYFL FTLLTFFSVR NVCGQQDTTN SFLDSLSTEV FSTSKLEQKL KELERKSQLS 61 ESDSIQKLSI LDSLIDFYKD KNTKEYNYFL SEKRHLDFKY ILPLKLSVKE NEYTNVSRNL 121 GVWKDTTDGK ITIQDIVNNP KIAFSTNTIT YKNMEVGAYY WLRLKLVGNS LRDELIALQI 181 GSVFETWSEI TFYQPVEDEA FRVEYSGTDL DPEKKPVKQW RNYFNVDVPT QSEMIVYIRV 241 HSNEQRFHPK AIIASVGDAA SVSQNSEEFT YAQGIFQGVL WVMAFYNLLL FFIIRDKLYL 301 YYVLMIIGIQ LNVFYYYRYI YFLFPTAQLL IRSCVVISHL FMIGGGLLFM RSFLNVKELL 361 PKWNKIINII NYILVSAVLI YLVHNLLSST PTWESQLQLS KYALVVILAI ALITTILSFT 421 IGFLVLRKGY SAARYYLIAT SGLLIGGFFY ALSYLLNLKG IKVDSDLFTY LFQGGVVIQL 481 VFYALGIGYQ VNRLEREKSD VLAENLELQK ETTSLLERKV KQRTVEIEQQ KEEIEAINSS 541 LMEQKNLMEK RNQDVTSSIN YARRIQDAVL PDLRSLKRSI PNCFVLYTPR DIVSGDFYWF 601 TQKGTEIILA AADCTGHGVP GAFMSILGDS YLNQIVNLQG VTKADSILSR LHGQIRRALR 661 QSSTENKDGM DISICVINLE HNHVTFAGAK RPLLYIQNDT IFEVKGDKYS VGGFQTKAEN 721 SYTSHQIDFN IPTAFYIFSD GYVDQFGGIQ NRKFMIKNFK NLLLEIHKEP MIKQRQILDQ 781 KFEDWKGNNK QIDDVIVVGF QVEPQK //