LOCUS AFM04360.1 1085 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 serine phosphatase RsbU,
regulator of sigma subunit protein.
ACCESSION CP003345-1848
PROTEIN_ID AFM04360.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_1975"
/note="PFAM: Stage II sporulation protein E (SpoIIE)"
/transl_table=11
/db_xref="InterPro:IPR010822"
/db_xref="InterPro:IPR011990"
/db_xref="InterPro:IPR013026"
/db_xref="InterPro:IPR019734"
BEGIN
1 MYSKIIFLIF FYTICFFSTT KLIAQSMEQL EEQFQNANSD SVKAHLKNQM AKIEIESKNY
61 ERGLLHAQQG FSSALQANAQ TELTTSIIYF AHIYRGKNQF TSSLRWYLQA LKNIEKTGNR
121 KLLAETYQEI GEFYQEQEVA GKALEYLTKS NEIYEEMGET VHPKLLSDIA YAHLQIKNYD
181 QSLAYYIAVL EIYNSQNDTE GKLETLRNLT DLYKIKGDYQ KALDYNKQVL AIHKSKKDNN
241 GTAVALNNVG FLNKFLGDYD KSLENFKQSL SFNPAKKPNT TTLTNIGVIY QVKGDYTNSL
301 NYFTQALEAA KKNGNADEVA QVYNYLAAIY LLRRDFQNAR AYTAEAIKLA KANKNSKVLT
361 KSYRTMSEIY QHQNDYRNAY SYYGQYAVVR DSVSQTEKQE LQKSLQRQIA FEKNEKELKL
421 LLIDEEIQDL ASKKKQLETD KRLQNLELEL QDKKIQETTL QNIHLERQKT QQALLLTQQQ
481 LESEKKEQAI KDLEREQELK DLALKQEILE KGKQKEEIKS LELENQLKAE QIATKELAEK
541 EEKLLRYILY GAIALALVIG LIILFAFFQK QKANKLLSEQ NVRITKQKDQ ISTQNQALEE
601 QKQEILSQNE ELEQNQEEIL SQRDYIEKKN SELEEQAIIL VEKNNEVEES YQNLNTLSDI
661 GREITASLHV EDISQTLYEK VNQLMPAEAF GVGIYEAAEK RIKFKGFIEK GSVLPDHFDA
721 VNNKNYFSVQ CLGKQETILI NNLEKEYPKK YEAAKNIIGG LPKSLIYIPL SVDNYPIGVI
781 TVQSFEKNAY DEKKVALLSS LASYTAIAID NAKAYNTIQN KNRNITDSIR YAQTIQQAVL
841 PSHERMSQYL ADYFVLFRPK DIVSGDFYWF SHIDNYTFIA TVDCTGHGVP GAFMSMIGHS
901 ILNEIVNEKK VFKPSEILEQ LNNQVRKALK QERQSKGKND KANDDGMDVA FCRLEYKENH
961 TEVAFTGAKR PFIYTLPNES NEKEAFYLRG DNKTIGGVRN KLTKKFRTQF IDLPKGAMIY
1021 LTTDGYADQN NTKQEKFGTP RLLRFLQEIA NLKLSEQKTR MEQTLNLHQR GEEQRDDISM
1081 IGIRV
//