LOCUS AFM04357.1 791 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 putative transcriptional regulator protein. ACCESSION CP003345-1845 PROTEIN_ID AFM04357.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_1972" /note="PFAM: Two component regulator propeller; TIGRFAM: Por secretion system C-terminal sorting domain" /transl_table=11 /db_xref="InterPro:IPR011110" BEGIN 1 MKSLINRLNN LTNSFIYKNL ILFSLLTTIY FTFSLQNLLI AQNENNIALG EWRTHLTYFD 61 AQTLATSPEK VYVASQNGLF FYDREFSNLE VISRIDGLSD IGISYLQYLP NIEQLLIAYK 121 NGNIDFLSDN EIKNFPVFFE DAAILDKQIY HIYYLQNVVW ISTNAGILEI DVESETNKRI 181 RNSYQNLGEN GEIIKVFATT IQDNIIYAAT EKGVRYTSLN ASINKNDFRN WQTIPSTQNK 241 VIESIGSSNS TVFFAIQNEG IFSYNGITSN RVSQIPITSV YDISENRTNL TGVFISSETG 301 IYQIEGTNSS FQVNKIENDL IKAPRQAISE NGILWIADNR TGLITNNSSN FVSLFPSGTY 361 SQNTWGFIQA KEKIIAFSGG YTEPFTPLNR TTGFYVFEDG EWINYNAENR DITSKPIPNV 421 RDLVGATYSE TENRVYFASL QDGILVWNLA DDTFSVFDST NSPLPHNRII DVETDNLGNL 481 WVALSGSNLR EDAYMRKQPN DDNSSSWKGF RFNQTRTTFP LSLEIDENNT IWARLSRFVQ 541 GGILVFNEDE ENTILIESVN SGNLASNDVT ALKSDQNGVM WIGTPAEVSA SVRTFSDIFG 601 LFNGQDLNAR DVFFESRQLL RDETITTISL DGGNRKWFGT TNGAWLFAED ASKQFLHFTV 661 ENSPLFSNQI LDIEVQDKTG EVFFATPNGI ISYRGTSTAA KTDFSNVKIF PNPVRPEFNG 721 VVAIEGLTQD ANVKITDISG RLVYETDSFG GTATWNGTDY NNTKSKSGVY LVYVSNQDGT 781 EGFVGKIVFI E //