LOCUS AFM04331.1 940 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 acyl-CoA synthetase (NDP forming) protein. ACCESSION CP003345-1819 PROTEIN_ID AFM04331.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_1943" /note="PFAM: CoA binding domain; Acetyltransferase (GNAT) family" /transl_table=11 /db_xref="InterPro:IPR000182" /db_xref="InterPro:IPR003781" /db_xref="InterPro:IPR016040" /db_xref="InterPro:IPR016102" /db_xref="InterPro:IPR016181" BEGIN 1 MQNSFQRILE RVLEGVRSWG ESVSAHHFHP SYDKSTMEAL FQPKTIAVVG ASKKEYSLGK 61 RLFENLTLLD YKGEVFPVNP KYDEINGSVC YKKIENIDEF IDLAIIITPA RTVAQIIKEC 121 GEANVKNALI LSTGFRETGE KGEEFEAEIL LEARKSGVRV IGTNSIGFIR PHLNLFATFS 181 NQRPKEGSIG FVSQSGAMGE GVLDWGNSQN VGFSAFISIG GMIDISWGDV IHYLGDDTRT 241 KAIVLYMESI NYARSFLSAA KEVSYSKPII VLKTGKRQQL ENNSTSPIHF EIDEDLIFNA 301 AFRRSGMLRV DTMAEVFFMV EVISKQPRPK GKNLAILTNA NAPAQLATTM LLKGGGQLAT 361 LSEATMKSLA EFLPKNWEYQ NPLDLHQFAT PEYYEKTTEI LLKDTNVDGL LVILAPQAVS 421 KPTETAKNLL RFASSKKKPL LVNWIGGTTT EEGRKLLSKA GIPNFQYPDT AAHIFNYLWK 481 HAYNLKGIYE TPRISDAMKK NPPNREKVAE IIAKARAENR TILTEWDAKQ ILLAYNLPII 541 DTRLAFSEDE AWLTAKAIGK PVVLKVHSRS IIKKSNVGGV RLFLKEEDSV RKAYQEIKKN 601 IEERVSPDEF LGVTVQEMNV HDSVEMLLGS KVDAQFGSLL FFGNGGKSLQ YYQDRTIAFP 661 PLNTTLARRA IEQTIIYKNI AKNRGLHEPT MALLEQSMVR FSQLITEQPF IKEIYLNPIT 721 VSRVGGVSIL DAVMILQPND VKDEQLVRLA IRPYPSEYEE KWILPKSKKE ILIRPIQPED 781 EPSMVVFHEK LSPQSVYFRF FHVVSLDQRR SHERLSRICF ADYDRQITLI AEKEKPNQIQ 841 NEIIGAIRII KIHGTKEAEF GMTIVDGYQG EGLGHELLRR AIEVCRSEGI ELLTADILSE 901 NRGMRTVCEK LGFVIEYNSD EGTVKVSRYI HTILEENQEK //