LOCUS AFM04289.1 1352 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 signal transduction histidine
kinase protein.
ACCESSION CP003345-1777
PROTEIN_ID AFM04289.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_1897"
/note="PFAM: Response regulator receiver domain; Histidine
kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase
A (phosphoacceptor) domain"
/transl_table=11
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="InterPro:IPR009082"
/db_xref="InterPro:IPR011006"
BEGIN
1 MFERLTTKLI GGFSLILILS IAVNLFAIIK LSQVQDVALE ISENWMPSIY EISSINTNTS
61 DHMIHQQQHI FALSETEMAE YEAKMREIET QIVESEQKYR AFLDERQEKL REMNNIEKGE
121 DGKDSKAMRQ IIKNRNDFEL YEKAYNKYLE ISKKVQRDSR YNNKEQAKQT LISRAALSFE
181 ESNQSLNFLI AQDLQNATDA AERSEEIYQT SRDLILSFTL ISIIVSVLVA LFIVRNTRKQ
241 IGGEPSDIAE MARRVSAGDL TMEFNRIESQ ESIYSSVRKV VENLREVSKI TNNIAKGDLS
301 TRIEVKSSND LLAISINQMI ENFKNIINQA QVIAKGDYTV NVKERGEEDE LSAAIQLMTE
361 SLRKNKIETF EQNWIKDGIN QLAQQLSGNL LSLELSRKAI NFISRYTESA QGVMYLVDNY
421 SSKLKLNASY AFTERSGLSN EYKIGEGLVG QVGLERSPIL LKNIRRQDMA LSTGTVEEPP
481 THVYAFPLVF EYELYGVIEL ASFEPFTQLK QEFLQQAANT IVTYIYSVLQ TDRIKALLST
541 SEEATRSAQA RAQEIEQANV RLEVQQGELQ EKSEELKRRN ESLISAKEEL DRRAEQLELS
601 NKYKSEFLAN MSHELRTPLN SIIMLSKMLS KNEKNSLVEK DVKKAKIIYK SGGELLRLIN
661 DILDLSKIEA GKMVINPVEF ANKEIVTDMN DLFQGIAQEK GIQFVTEDKT KSYIYSDKER
721 LAQILRNFLS NAFKFTKKGK VTLSITDHDD DHYKYSINDT GIGIPKDKQQ VIFEAFKQAD
781 GTTSREYGGT GLGLSIAREL TKLLQGYIEL DSEAGIGSTF SIILPKKLDE KLAEKEDRVT
841 VIVKNLATRK NKSSAQKRLP RKLIREDIED DRDNINKNDS VILIIEDEVQ FAESMAEVLH
901 SQNIKTLIAQ SGEEGIDLAI QYKPSGIILD LGLPDIDGTD VLKKLKSYKE LRHIPIEIIS
961 ARDKDNDLLS TGAFGFLQKP IDENVLKKAM SDMLRLSHKK VKDLLVVEDD ESQMEAIKEL
1021 IIGDDVKVIG VKSQKEAINA IENGTFDGAI VDLGLKDGSG QEVCKYINEN HPNIPVIIYT
1081 GKTLSPEEET NLRQAAQSII LKTRDTGEKL REEVALFLHR MEEEVEKETP KNTKKTEENS
1141 KKTRTAELAE SLLAELQVDK ELEELIPKRG NKNKNKKTEK LEGDIPPRSL TRNSINEDMT
1201 NDEDDVEEYK SITESIKEIS KEEAIKLIKN QTILVVDDDI RNIFVIASAL ETYEANILEA
1261 MNGQQAIDML REEDIDLVLM DSVMPEMNGL DAMRIIRQDE DLKHYPIVAI TGKAQEEDKQ
1321 ECLEAGANDY IVKPVDYDQL VYTVCKWIGK RV
//