LOCUS AFM04222.1 984 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 putative membrane protein, required for N-linked glycosylation protein. ACCESSION CP003345-1710 PROTEIN_ID AFM04222.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_1824" /note="PFAM: Vault protein inter-alpha-trypsin" /transl_table=11 /db_xref="InterPro:IPR013694" BEGIN 1 MNPFLHPRWI FFSTVLPQLT LFIIYYNAFQ VFGMQLDEKT ISIWYIYGFS FLGIIIAQTA 61 YAAYSTYHSK PVNGVWSVAT VAIYLFLLLS YYLQAKNLVP RSVPDWIQGV TDVQSFMGMF 121 IFPAILHAII VAVVHFTDKK LDKANTRYHF WAVLAIPLSI YLSINLLVPF LNKAFSYKFS 181 EFAMTILMSV VIISALFWLF RVVYLAYLNN KFPYLHKILE VLFIGAFPLL GLLLSAELDN 241 PLGNFQSYWF FSFAVLAAII LIIPSSNLKS YKTRFIHFLL KAFVFPYTMY FLIVFMPFTP 301 LSVILVIVGV GLLMLTPLIL FLIHSQQLYQ DYDYLTKKYS STLLFTSFLI AVAIIPLAFS 361 LNTYYDRIQL HKGLDYLYSS DYNENKNTPN PNSISATLHH IENFKIRRNR DWFNFDNNAI 421 PLLDSFYKWL VLDNMTLSES KINLLNNVFV GENMPKSEKT WRIWNQNINQ NRNFETGKGD 481 NTVKIDSTKI TSVFDPTQNA WRTQVDLVLH NAKNGFGRRE YATFFDLPEG AFISNYYLYV 541 GEEKVEALLA EKKTALWVYR QIVNTRKDPG ILYYNDKGKI GFRVFPFIRN EYRKTGFEIL 601 HAEPFELQLD DYTTVFLGNE NDVNYININL SSNMNAAPNC VNVEENSGIE GIKTLKTSNP 661 NYISESELQD LKTITRKPYY HFVLDNSKYG GIGKEKYIER IENFVSNNPL QNSLESKYTV 721 VDFEVNELRK NWKDDYLNKT NKGGFFLEKA IKRIWLENYL ENLTIETSQK STQPIIVVVS 781 DELEDGVWTG SLHEWKKYVP EGFEFYELAS NNRIMLQNFE HFKMLGEPVD KIAIKKVKQI 841 TKNEKTYFLP ISTKNGITLP ITEFEKKEEI TSADIENFEK LPKYSQALAL QNLNETMALY 901 PTQAEKRWLE QVQKSFTARI LTPVTTFMVL ETEVQRKALL KKQEEVLSGK RLLDLTDARR 961 SSEPSLWIFM AIFGILFLIK YRKI //