LOCUS AFM04200.1 1276 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 actin-like ATPase involved
in cell morphogenesis protein.
ACCESSION CP003345-1688
PROTEIN_ID AFM04200.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_1802"
/note="PFAM: Ppx/GppA phosphatase family"
/transl_table=11
/db_xref="InterPro:IPR003695"
BEGIN
1 MAQPQNNSRH LLTLRKERST DKKGWHTTEI YNSSRIEEID DPNGSKVAIP PSSIPTPFAQ
61 MHLYDIAFKM VNRLGHEGST IYHQLVSECL DAIDLIYNLR EHLQADKDGH FSLVEWNIDD
121 RIKSLKNSDN DGHRLLGKTI ELFTGELSPF GKDLQRERKT PSFYILTYDS TPIIATSPLT
181 FAFVSKTAEE EEKHFLDLIS PIKTLDGRAM FTGVKPLHQR PMELQNYMHR LFYLNKGLLN
241 QMDNIHEYMR VQKEKFHNTK GDEIKDVYDE NSKMGAFEMD YKDIVINGKT PRIERVAWKS
301 CAPIITDGDL DSSYLIKPSP SKEKTARLEI GEGSNVKKVL PLVLQEGFDN PNFTYFKGKE
361 WNNKTQVEFS LPKNNWADRN LPQIGYNYPY LVTTDLLAED LIRMPYLINP DTFVVPENHI
421 HVQSVDFLLP VTDLYFKFFD EETLIQNLTI EEIESEQGDI KVTLKVPIKG NTNSNSAAFI
481 IFTRFYDYGN PRNINNGKII NLVDDGKDET MDDIPSPFSI SIYPFVRTGD AEYDTMYKIM
541 LLSSQLDNVE EYDLVAYNEE NVISTSDSAI EKISRFERKV EGSHLSVYSV SGTCFDALEI
601 ITPYQGKTGE KARGWIVPKW KKPPHRGTNP KPFTVAVDFG TTNTFVAFTD DDAATAGKIK
661 TYPFFIGEED MQAVTLNKPT ADKKHVMLER YSFDDNAIGL ATTFFQDRMF MPNLIGNPPT
721 QEALYQNWRN SFPIRTALIH SNDVKFDVLL NSAIGFLYEK DNLDIARHGQ EVTTNLKWSA
781 ENSKLVEVFI EQILYMIRNK VILNGGDLSR TRLVWFKPLS LPKTLTDKLT RVWNENSRKI
841 LGKNVTIRLV NESEAPYFYY RATGKIDKSS SVVSIDIGGG STDIALVSNG GKKRLATSAF
901 FGANILWEGK DGKAAETEGG VVSKYRSWFK ERISLTKKGI SQAEGSRIEM IFNEIMDSGR
961 FDSSEKASFM FSAEHIDFAE KLSEDKDMLL LFLLHYSACI YHAVQLLAVG GMPYPKDFCF
1021 TGTGSKYLNL LDHSEDKNGL QKFTEIFAQK TYEKYKDLGI DTKPKTETGF DVEEDENVFA
1081 GFEGFDELEG GLPSSDAEEA GEVGGSINLH LTKEPKEATC FGGIHSFSGD YKDLGLGQNI
1141 NTVFLGEIDA TQDDLLPQKN LTYEELIDEN GRPTKEGNQM AIRVSKNLDQ FLELFLDMNK
1201 NPQTRFEDFN IETNLAAFEQ GFKAIKSKEL AKGMIYERSN ASGGYTPVRE SFFFYPLRVI
1261 IRDLALAMAK NTTVNM
//