LOCUS AFM04134.1 1149 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 hypothetical protein protein.
ACCESSION CP003345-1622
PROTEIN_ID AFM04134.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_1734"
/transl_table=11
BEGIN
1 MNTSIEALYA NIQSYKRKYY KNLLLKGSLL AISAFLGAFA IVSILEYFGN FSSTFRAVLF
61 YSFISVSIFS LVYWVIIPIY QLFTLDKQLP HNEAAKQIGR YFPQVEDRLL NVLQLHSTNN
121 KNFENQSSDL YQASIEQKAS QFAPISFSDA IEYEQNRRYL RFLFIPIVLI AAFLVWDMDF
181 YKASAVRLVN YEQDFAPKAP FQFSVDTKQL IAFKGEDLNF DVNLSGEAFP NEVFLISDNG
241 RKVKLDKNSA SSYSYQFTNI QRPFEFSLDG EGYTSKMYEI IVRERPQLRN FVAYLNYPNY
301 TGKKDERQEN TGNLIVPAGT QIEWRFQTQE TEKLNFVSIV SDDSTNIKTA KKEEDGFLLQ
361 TMALSSEAFE IELENKYSKN KEKISYLLTV IQDEFPKVSL NQFQDSVMYD YLMLGGNISD
421 DYGITNLRFN YRITSNKKTS EYKSLPLKFN PNAINQQYFH QVELAPLELK AGDELEYFVQ
481 VWDNDGVRGN KSSKTGSYRF QIPKESEMRE SVTESSKNTE SQMDKTLEEA QDLNKKIKKL
541 AEDLKGKKKL SWQQKKELEK LLEDKKQLEE DIKKMQEQNK KLNEQQEKFT EQDERIAEKS
601 KKLQELMDEL MDEKTKELYD KLQELLQEQT ESEEIKEVLE KLQNKEMNLE KELDRTLEMF
661 KKLEVDKKMQ DLAEQLEDLA KEQKDLAKET EKQQEKEDKQ SKKEAEKDAE KDAAKNEEIK
721 EEQKELNEKF EEMKEQMEEL DKMNEELKTP KDLEDTKKKE EEVSEEQEQS SEQLEQKEKK
781 KAAQSQENAG EKMEEMAQQM QQMTSSAEME QAQEDYDDLR QLLENLLKLS FEQEEVMNGF
841 NEIDQRDPKY ITLSQDQLKL KDDAQIVEDS LRALAKRVMQ IETFVMRELT DMNDYMAQVT
901 QEVKDRKNPR LLANHQQSVM TSINNLALML NDVLEQMQQS MSQMGMGKPK PSNQSGSPSM
961 GEMQQSINQQ IENLKKSGKS GRQLSEGLAK IAAEQEALRR ALQKAMKQGK DGKDGKGKEG
1021 KEGKDGQNGD NGEGDGGSQG NGGNMSQMIK DMEKTEEDLV NKRLTQELIE RQKQIMTRLL
1081 ESEKAEKERD LDEKREAEQA KANKRTVPPQ FEEYFKQKEQ QIELLKTIPP ALSPYYKQQV
1141 NEYFKKLEE
//