LOCUS AFM04108.1 982 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 BNR/Asp-box repeat protein protein. ACCESSION CP003345-1596 PROTEIN_ID AFM04108.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_1700" /note="PFAM: BNR/Asp-box repeat" /transl_table=11 /db_xref="InterPro:IPR002860" /db_xref="InterPro:IPR011040" BEGIN 1 MKRYFLTFLT TALFTSSVIA QDIQLEFTKT ENRINSQNES IKKLEDSWLK NVPIKSIGPT 61 IMSGRVADIE VNPNNPTEFL AAFASGGLWY TNTNGTSFTP LFQNQRVMSI GDIAVNWENS 121 TIWVGTGEKN SSRSSYSGDG VYVSYNMGKT WEHKSDTELN ESQHIGRIIL HPTDKNTLWV 181 AALGHLYSKN KERGVYKTTD GGKTWKKTLF VDENTGAVDL IIDPKNPNIL YTATWQRHRA 241 AWDFEEAGIG SGIYRSDDAG ENWTKLTTKE SGFLVSEGIG RIGLTISKAN PDWIYACLDN 301 QDRKPKAKET NKTQKTKLSG EALLTMTKEQ FLKIPDAELT EYLRKNRFPK KYNTTFVKTQ 361 IKEGKIQPKA LVEFLGDANS RLFDTPVKGL EVYLSKDKGK TWQKTHEGSI DEVVYSYGYY 421 FGEIRVSQIN PKKLYVLGVP LITSDDGGKN WKSINKDNVH ADHQALWLNP KKDGHLINGN 481 DGGINITYND GKTWSKQNSI PVGQFYSVAT DRAEPYNVYG GLQDNGVWTA SHEYEYSNSW 541 QEEGNYPYKR LLGGDGMQVE IDFRDNNTVY TCYQFGNCFK IDKTTSERNY ITPSHELGQK 601 PFRFNWQTPL HLSKHQENIL YMGSNYVHRS FDQGKTWETI SEDLTRGKNS KGAKNGDVAY 661 NTLTSIDESA LRFGLLYVGS DDGMVHVSKD AGFSWENISQ NYLKEFPKYK NFWVSRVIAS 721 QHKMERVYIT LNGYRFDNFE SIIFVSNDFG KTWTQIGKDL PLESVNVIRE DSKTENLLFV 781 GTDHNLYASL DAGISFMPLG KDFPRVAVHD LSVQPVANHL VVGTHGRSLF VIDIAPLQSL 841 SATKNTEKSF FLQKDKVKYN KNWGRNYWSK WAGNYEPNEE DKQFIFFAPK KSNAEIRILD 901 KNNMILHSEK LEANKGLNYW NYDLTINEEA AKKISKSLST KAKTFIISKS DNEKYYLPIS 961 SYKIVLIENG KTTELPFEIV EK //