LOCUS AFM04011.1 842 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 ribonucleoside-diphosphate reductase, alpha subunit protein. ACCESSION CP003345-1499 PROTEIN_ID AFM04011.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_1593" /note="PFAM: Ribonucleotide reductase, all-alpha domain; ATP cone domain; Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit" /transl_table=11 /db_xref="InterPro:IPR000788" /db_xref="InterPro:IPR005144" /db_xref="InterPro:IPR008926" /db_xref="InterPro:IPR013509" BEGIN 1 MYVIKRDGRK EEVIMQKITA RIERLCDNLD TRYIKPKEIT YKVLAGLYDN VTTIELDELA 61 AETAATMATV HPDYAILASR IAISNLHKET KDAFSETIEE LYNYINPKTN ESAGLISDEV 121 VQVVRKYAHV LNQAVDYSRD YEYDYFGFKT LERSYLLRLD GKVTERPQQM IMRVSVGIHG 181 ADIDAAIKTY HLISERWFTH ATPTLFNAGT PKPQMSSCFL LEVQGDSVDG IYDTLKQCAK 241 ISQSAGGIGV SVHNVRATGS YIRGTNGYSN GIVPMLKVFN DTARYIDQGG NKRKGAFAVY 301 LEPWHADVFE FLDLKKNHGK EEARARDLFY ALWISDIFMK RVQEDGEWSL FCPNEARGLA 361 DCYGTEHEEL YTRYEREGKA RKTIRAQELW FAILEAQIET GTPYMLYKDH ANNKSNQKNL 421 GTIKSSNLCT EIMEYTAPDE VAVCNLASLA LPKFVMDNGN GLEFNHEKLY EVAYTATVNL 481 NRIIDRNYYP VEEARNSNMR HRPIGLGVQG LADAFILLRM PFESEEAAAL NKEIFETMYF 541 AAMTASKDLA ITEGAYETFE GSPLSKGQFQ FDMWNVDEDY HSGRWNWEEL RGEVVKHGAR 601 NSLLLAPMPT ASTSQILGNN ECFEPYTSNI YVRRVLSGEF VVVNKHLLKD LIAIDMWDDQ 661 MKNELISANG SVQNIKRIPQ ELKDIYKTVW EISQRTIIDM SADRGVYICQ SQSLNVHIQN 721 PTFGKLTSMH FHAWKRGLKT GMYYLRTKAA ADAIKFTVDK DALEIGKDTA INHKAKAEEI 781 VAQSNEEMLE MAGAGDMEEQ SNLALARIHK RQNGQAQEEQ LKDGLGGAAC SLDDEDCLVC 841 GS //