LOCUS AFM03975.1 1319 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 hypothetical protein protein. ACCESSION CP003345-1463 PROTEIN_ID AFM03975.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_1556" /note="TIGRFAM: Por secretion system C-terminal sorting domain" /transl_table=11 /db_xref="InterPro:IPR008985" /db_xref="InterPro:IPR013320" /db_xref="InterPro:IPR013783" BEGIN 1 MKHIYILCLF CLLFFKPVCS FAQIDTRFWF AAPEVTNGHG DDPIYMRFAA FDQPATIVIS 61 MPANGAFTPI VVNIPAFGSA STNLTSSLNL IETPNMTNTA AADNDANRNY SAVFQSGILI 121 ESTAKITAYY EVNRGNNPDI FALKGRNGLG VDFYVPMQTE WNHRTGLGPN GHSGFVIVAT 181 EDGTAVTVTT TRFTRSLGAA GTYVINLNRG QAYTVASQQP SAGNAPAGSH IVSNKPIAVT 241 LYHDSIYSGL GSGCLDLAGD QLVPIDIVGD EYIVMRGTLG VSSTAQPEKV YILATQNGTT 301 ININRNGTAL APVVLNAGQQ HVFDMDFGTH PKAYIKSDKP IYVLHMSGYG CEVGAAILPP 361 IECTGSRLVQ FNRSTSESFS LTLLVKEGGQ GDFTLDSIPI PASNFTPVLG SPDVDPANGT 421 EDWYSARIDY NTTTVPTGVH SIANSSTLFH AGITNGGAGS GCRYGYFSSF NSLNLGPDIA 481 IFYGSNVVLD ATTYGAVGYK WNTTPVQTTA QITVNVRRTR DYIVEVDLGR CLVYDTICVG 541 TVEYVWIGDE SDDYGDIRNW SAPCGEDALP NCERDIVIPA LVNGIPPVNF PRIYDNETQA 601 CRNIIIENGA SITINPLGRL NVCGDMVHSG ILNMPTGSTL EFRGIQPQTY TKSATGTGEF 661 ANLRINNLTP LPDVARLKVS DAGTQNMVVS PTGTLTFVNG ILRTEGLKEI VVRNPSPSSI 721 TGYSLSSSFD DRFVGGRLRR SINSTGIYDL PVGLATENIG AATPEPTKRA TIVNTVLADW 781 INDASFCALN PLPSNHIIAL TDSRSNVANV PAYKHIALPA SVALLGNNAR TVEAWVKITA 841 NPVNGAIFYL GRDATKELFA LRKIGTGTGY QIDLGGGLVK DFVLSGTVGS WQHFAMTYNG 901 ISEVKVYLNG NEVESFNVSD LNTTGDFYIG RYRNSTNQNW YLAGRYDNVR VWNVARAQAE 961 IFANYCVRYE CTIPPELIAN YDMEDGEGFA DHKIKNCTID PLQYERARIE FQTPITDTDN 1021 LLAFFNQYGT TPTSPNEYRC QALFGSCEVL NHGFWTISAF SDTTQVTGNG NYRMTLYNNA 1081 YTNVCTSPNA AIMKRATSSD AWSIPNFPAL CYDNTLNSTS MEWLSGFSDF GVPQTLNPVI 1141 LPVDLISFTA KPLLSTILVE WKTINEKDNA GFEVMRSIDG ENFTKVGWVA NNSTGAYSFE 1201 DFEVNPNQIY YYHLNQIDNN GQSKISPVVD AKIDGTLSGG IKVYPNPTTD DFVIDLGETY 1261 IANTTYQIEI YNSIGMFLKT KTISNTSKIN MSLKGMTKGM YIIKIITPVR MKIIKLEKE //