LOCUS AFM03924.1 947 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 outer membrane protein/ peptidoglycan-associated (lipo)protein protein. ACCESSION CP003345-1412 PROTEIN_ID AFM03924.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_1502" /note="PFAM: WD40-like Beta Propeller Repeat; OmpA family" /transl_table=11 /db_xref="InterPro:IPR006664" /db_xref="InterPro:IPR006665" /db_xref="InterPro:IPR011042" /db_xref="InterPro:IPR011659" /db_xref="InterPro:IPR011990" BEGIN 1 MRFILLLFSF LLLFQNFVFG QNTIKEGLQN LQSKNYPKAI SIFDELLKKE PQNTALLYNR 61 AYATLLLHQS NKVIEIKTED LRFKNFQSQH DTLKHAYKLT SQALENYRNL SESDKNKLIS 121 EGIGNFKDVF NLKEGIAKAS SNLIVDAFYY VPFQRLPLTP PYNRPENADT TQALRHILVL 181 QATDFLETYQ KTRAYDGIKN ARRSLLKEFI TIPDLRARGT GNGYLYEKYY AYILEDYTEE 241 ELRNIIPEFY GADWNFPKYG YKNKEEYKKL EAFAKSKSLT VLELFGKLNL HYKGVIYENK 301 MCLNCDLYSD FINEFAPHQL AFVAVQKLAS QFIVDKKWSE ASAVYQKFKP LFVNKNFGKQ 361 DDFDKIIALL NQKEDNLRLK NLGKNINTGG YETAPVPFVN SYGNEGLYFC RMDLGTGQDV 421 YYSFYENGKY SKAVRLPDGV NTNTHEVPQS VSFDGNTLVL FGNYGGLDAY KIELRQQNNK 481 LGNGDLFFAE RNTKGDNNNS NSPTWGRIKA FPFPVNTPNY EAGLSFSADG NAVVFSSDRE 541 GVIGNHLPKA PKDRLYFHGR EEFNIDIFVS EKNGETGEWN EPINLGEIIN TPFAETQPFL 601 HPDMKTLYFV SDGHYGIGSG DIFMSKRLNP NSWTEWSEPV NLGKSINSPF LDGFYMGTSG 661 EFAFIVLKNT ETANQNQNNS YKTNYDIYRF EVPERFRPEP VLPPTIITGK LIDKNGKGIQ 721 TQIFIEDLGT GKIISSTQSS AKDGSFKVQI SSNLFSNSNS SNPKIGMYAK EKGSFSTSQN 781 ISITTNKKGG NETNQNSSSN STSQTSKTGM KDKPIIYTTN QNLEIYKISE LINGETTVRL 841 NNLFFDFDSY ALQETSLPEI ERLFEILKDN PTLKVKIEGH TDNTGKAEYN LQLSKNRAKA 901 VSEQLISLGI DKSRVTFEGF GSQRQIADNF NDEGRAKNRR VEFRLSE //