LOCUS AFM03911.1 1819 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 hypothetical protein protein.
ACCESSION CP003345-1399
PROTEIN_ID AFM03911.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_1487"
/note="PFAM: Family of unknown function (DUF490)"
/transl_table=11
/db_xref="InterPro:IPR007452"
BEGIN
1 MNFFQKIKNK FSNKSTENQA DTASKPQSKT KKVFKKIAKV LMWIFGSIFG LLALIFILLF
61 LPPVQDFLTE KAEVFLSKKL TTKVAVETIR LSLPLGLAIN GLYIEDLQRD TLLYAGYFNA
121 NINPFALIDK TLQVTEIQLD DVYTNIWIAE DSTSNIDFLN AAFAPTDSAK TSEDQTTTQI
181 EANDSTSNTG LIISLGGIDF KNINAKFDDR FNGNDIKGKI GQLKVDVDDF DLNNLSFTIN
241 DILLKDTDLR YVQTKNPPPS LEEPDTTTSE LGFQIDLNKI NVENLTAFYQ SNVTKQQVDG
301 KIGSLFINAQ QTNLGTQKIV IQDVELKKTF ISYKQGVTKT ALDSAINNSA KIVAEETEQI
361 AGTKTDEGKP WVIEVKNILL AENEIIFEDE NVQKSDYGFD ANHIHFEGVA LEAENFKFYP
421 SNIAADIKTI QATDNKQQFQ LKDFDGNIRL DSNGVAVTNL NIQTARSKIG QTLKLAASLE
481 NIAEDWQNAD LDINLDGTEI ALADIFYFVP ELAKQVNLSK QTIETIKISG QATGKANNAT
541 LKNFQIKGLS NTDLILTGNI KGLPDVEKMY LDVKLNKLTS SRQDLQKFVP YGTLPAGYNF
601 PQKIFMTASA KGSMNDMFVE FLANLDNTKI QLGGTVRNPT DPNKMYLDIA TKQFLIDLNE
661 IKTYLPDTLI PSTISLPPKI DGNIVFTGFL NDFEIDTKFD TELGNIGAKG IMKNAVSETE
721 IPIYTITALV ENTQLGKILQ DTTLGIADLQ ITADGSGFEP EIMKTTLDGN INKFEFQKYV
781 YKDLKIDGII DGMSYNGKLN MKDKNLTFDF DGNVVWDTLN PKFVIDLDLQ KVDLQALNLY
841 DKPLNISLML DADITGMDLD NLQGNIGLQK VIIDTKKQKF RIDSAAFVSI SQKGETNINL
901 SSDIISAKIE GNLDLSTFVA TLKNHINTYI EIDPVLPNKE IGTQQMDFNI QIHKSELMTA
961 LVPDLTKFEP ASFDGKYRSD SKKFELNGKF PSIIYAGIEM DSLTINMNSD SEALTYQIGI
1021 AEINNGTLQF EHPTISGKAA NNKADLRINL KDEKGKERFD FITFLERPDT TKFIVSLAPT
1081 QIMNYDNWTA KKGNQIVLGE KLSIKDFLLS STNQTISIQT TDEDKNLLAS FKNFELSTIT
1141 DIAAPNDTTK LATGRLNGKV DLQNFQTEMQ ILADLKIDEL IVLNSELGNL KIDAENSKAK
1201 NRYDVNINLT GQNEFELTGY YNAAQNASDA LNMNLDIQKL ALPSLENFAM GNLKEMTGTV
1261 TGNLKIKGTT EKPAILGNLD FNKTSFFLTA TGTYLDLEKE TINFDNNGIA FKDFTLQDKK
1321 QNVLYVNGRI NMPTFSDFNL DLNVKSDKFL FVDSEKSKNP KEEQLFFGKA LAGLDVNVKG
1381 TAISPVVTAD VNILGETDLT YIMPETEVAT IDKEGVVEFV DRDFYTDSLI SVEPIDASDT
1441 TQYATDMDVQ AVIKISPLAK MTVDIDESNQ LEVQGGGDIN FNLNPSGEMS LTGRYEITDG
1501 IYKLNFFNLA KRDFTIQKGS SITFYGDIMD MKADITAIHT VEAASYELMA NQLGNTSESE
1561 LNKYKQKLPF EAVLNMTGDV LNPIIDFDID IAEEERGAMG GTINTRLQLL NKQESELNKQ
1621 IFALLILGGF ISENPLDRAQ GEMGFAETQA RNTVSGLLTD QLNKLADQNL SGIGLSFDLN
1681 SYEDYSTGES QSKTELGINL SKSFLDDRLT FQVGTNVDLE GETAQQDDQQ GLSSIAGDVI
1741 ISYLITEDGR YKVQIFRENS YAGVIDGQII QTGASLIFVR EYDEFSELFK KDKEAEKLKK
1801 EIKQREKQRK EEQKTKKEK
//