LOCUS AFM03880.1 931 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 TIR domain-containing protein protein. ACCESSION CP003345-1368 PROTEIN_ID AFM03880.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_1454" /note="PFAM: TIR domain" /transl_table=11 /db_xref="InterPro:IPR000157" /db_xref="InterPro:IPR011990" BEGIN 1 MTKDAFISYG RRESLGFVGR LYQSLKLRGY EIWFDKVNIP DGDDYSKRIS HGIESAHNFI 61 LILAPRCLTS PYCLIELEYA RKLGKRVIPI DQNVIFDTKD APLSYQERSA LVQFYEANGM 121 EVLPIFSKKD VLNRSHELLG KTDWVHTRQQ LSEDDINQLY NWQLTYENRW QRHEELEFTK 181 NTENQIPIFG KDIDNFEEGF ERILKVIESQ KEYIYLHTEI IQKALLWEAN RRQTNLLLVG 241 KQRQKAQNWL TQNFVSPNQP PCLPSVLHSE FITESKKNAD NLMSEVFLCF APQENKETQK 301 IRKGLIKAGI TVILPNNSIQ RENQKGFDTS NYTEEIKEQI AHADNFVFVL SNSSAKNSDC 361 LRELRFALTF HKRIIVVLAK EVNKKELPEA LRSLSSYIDL TDNRTEDNFT NNLDFEKDLS 421 ELICIIEDNY DYYRNHKRYL AQALKWKEQH QNDAILLRGH NLEKAQTWLH QGQLQRNSAN 481 STKLNTPTKL HKKFIEESIT KIGTLSSEVF ISYSRTDGDF ARWLNEELQL NGRTTWFDQE 541 CIPAGSDFGL EIKNGIETSD NFLFILSPAS ISSPYCKDEV LHALSMGKRI ILVRFQAVEK 601 MPDYFPSHIQ WIDFSKNDLQ ADNGQQFREL LRTLNTDREH TQKHSKYQQK ALEWNTNEKN 661 YAFLLIGNEL AIAENWLEEC QKHNKIPTST SIQKDFIFES IKSANTQKRK QEKTILRLRV 721 FLTLAVIALL AACGLGLWVH SLNMQNQIQF LELKVAQDSL IQTTEKEKAL KFQNYFQTAN 781 YQKSSTKYEE AIKNYTIALN FADSSQTIKV NQAIQQIETI IPKKETFFKL VEKGENAFKI 841 KNFVEAYNYY KQADSVGYNS HLVKTHLEVL EEYVKLEINK MKQQTIHLLE KNKEKQAYST 901 ITKALLFAPS DTSLLSLEKR VMRQMLGTEN N //