LOCUS AFM03826.1 1128 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 histidine kinase,Y_Y_Y
domain-containing protein,histidine kinase,putative transcriptional
regulator protein.
ACCESSION CP003345-1314
PROTEIN_ID AFM03826.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_1395"
/note="PFAM: Y_Y_Y domain; Histidine kinase-, DNA gyrase
B-, and HSP90-like ATPase; Two component regulator
propeller; His Kinase A (phosphoacceptor) domain"
/transl_table=11
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="InterPro:IPR011042"
/db_xref="InterPro:IPR011110"
/db_xref="InterPro:IPR011123"
BEGIN
1 MNFNFPLFSL FKKYINSIIN FICKWSFSCV LIFVFILSVT FSFAQQNVSL DTKKSLSQYI
61 FRTWTTEEGL PSNAILDIIQ DQKGYIWIAT HDGLARFDGA KFTSYTVRNT PIIRSHAIRS
121 LLADRNGAVW IGTQRGILKY ENNQLTIPME FSVLNEYSIE IIYEDATGVV WVGTSSNGVF
181 FYQDGQFRPL KELRLHLQGA VRSIFEKDNA LYFASQRGDI ARYENNKINR IVDFEQTRGI
241 LFGKTINKRT WIGTDNGLKF LQGDSLISPP YPKINAIKDA FDILEDQNGF LWIASENGLY
301 RYNRTTKVLE NYNETQGLAS NILQKLVVDI EGNIWIGMFR GGLAQILDGK FVNISPSEGL
361 CSNIIYSILQ FTPEKYLIAG ESDSISIVYG NTVRNARLPL QLPSQRIRHM LFDADSSLWI
421 STYSGLVKIT RENKHKIYEP KHGLLDDHVR LTFQTKDSTI WAGTRRAGLF YLTKEDSFKH
481 VNDNLASETV MSMAEDKKGN FIVGTKRGVS FIENKQIIKQ LWTQNGLASN IIFSIFVDTN
541 NVIWLGTDAG LTRIEGDKIT NFDASSGLCE GTVFDILEDK EGYFWLPCNN GIMRITTQQL
601 NDFANGKRPF VDCRFFNRTD GVKSDQMVGT GKGLVDSKGN IWFPTYKGVA YINPKTITRK
661 ENDSKAIFEK LETDKKNIYD FDKDIYLAAG TQYLSIFFTA FDYQNSFSLD FKYRLVPFDK
721 EWIDSQNQRN ATYTNLPPNE YRFEVITRKG DGSWNEENPS ILNFTVRPHW YQRLIFQVAA
781 VLGVILFFLL IYYLRNLQYK RNQIYLEKEV SSRTEEVLKQ KSQLQVQKEE LQNTVHTLNQ
841 TQIHLVQSEK MASLGQLTAG IAHEINNPIN FVYAGVDALQ TTLDELMELM NLYEELEELE
901 KNNANEEQKK EKFNEIIELK SQIEFEELKQ DLNQLVKDIR YGAHRTSEIV KGLRTFSRLD
961 EVELRWADLH ENIVATLVIL RPQYKDNIEI IRNFDKNISQ IECFPGKLNQ VFTNIIANAI
1021 QAIDEKSKNN KIIISTQKLS KEESPLNIQT VKISIQDSGK GMKEEIRQKI FEPFFTTKEV
1081 GKGTGLGLSI SFGLIEKHQG KMEVESIIGE GTTFLIYLPI DRNEILST
//