LOCUS AFM03746.1 1104 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 hypothetical protein protein.
ACCESSION CP003345-1234
PROTEIN_ID AFM03746.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_1314"
/transl_table=11
BEGIN
1 MPLTKDIKTR QNQSMKNLIF WKKWSLAERI LCTLSIFALF AALGVYVYAF VLGEKAVFEW
61 NSNGELTAVP LQIDSFQHVF FPFIAEVDGY LLNKTFSTSF LQLNYSAATI FAFIVAFAWV
121 LILTASTYLR VHFYGIVMFA FAIFLSYCSI DGLAGIQGLM DWQNEKKWFI IVLLSFGIVT
181 FLFQFFEKGS LLIRFLVILA VTIAMGFIID SQLNTLNNPV FFLANYGIVI PIILTFLFVV
241 FNAHEIPRAL YWLVSRGADG SNSTLTHFAI VSAIFFFHMV YSYLLSIRAI SWELIYIPPF
301 VIFAIMTVLG IWGFVGREEH YKKFFEARPV GLLLYIGWAL IASSTIMYAI STNNDPLIDI
361 FSDIIIYSNI GFALAFFIYI FVNFSELLEK SLQSYPLLWQ PRKVNWSYTA LIGFFIIIIL
421 AYRHNFIHYN QAQAGYLNGI GDVFLSEADA LKNEGVNKNA VGNGITSNLS LKEVEARDKK
481 AEDTYKLAKI NYQSAIYKIY TNHKAYWGMA GIALRQYHWQ EAYSFLKIAS ERTASPYTYT
541 AVSDLMNRTN NADQSYFTLL RGSAEFPESP QLKNNLIFSS IERFGLKNND SLARELEKVK
601 KFASSKDEKA ALDANWWILN ALTDNYTALD SLELRIKTQE NTGALSNKIL YQKRFFDLDR
661 KAAKLNSNTD IKFNQKLIQD SIWTTEDLLY VYHYGLLNQQ VEDETSNQKI DSTIVELIQN
721 REQILANQEH IPFMLLAKAV NQYKLGDVYN AFITLKYLDT AYGNSSAQYK HLLGLWLLEH
781 KQYNQASLYF NKAYLMNRGL NNLYEAIALS EKTLYQTDKK EALQMWKGWD TIPSHPFQAT
841 ASEMYLILQN QTAKVTNFDS LDDDAKRRYF HYQIPYLIGE QGTIEFTEKL RTMKSQNLKL
901 EVVLDKIEFD LKNNNLQSAL VWRNSATQLS AEELESRTLE RFQLIDLELL WKDNKLLSMA
961 SILDNLNPTR AYEKSKKQFY TALFAEQLGD TTRSKIAMEK AIMGLPFDFE ILEEAIAYYK
1021 RNNLKDEAYQ VAFQVIETFP YSAKANEIYA LEALNIGLDD YAERSKEFLR LNMPKAYEEF
1081 LPKYDTLKNQ KERAFENWMN GGEI
//