LOCUS AFM03718.1 763 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 C-terminal processing peptidase protein. ACCESSION CP003345-1206 PROTEIN_ID AFM03718.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_1284" /note="PFAM: C-terminal domain of tail specific protease (DUF3340); Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc)" /transl_table=11 /db_xref="InterPro:IPR001478" /db_xref="InterPro:IPR005151" /db_xref="InterPro:IPR020992" BEGIN 1 MKTYLKNIYS TADKSENALF QRAKKNINNK IKSSIRFGYL SGFALLVLSS CNQNQNTADA 61 QELDSSQIPM EMVAQNVALQ YPSMTNLDNP DEDNEEKNRF LLTLLVQALT QQHYQPLALD 121 DDFAAKTFDL FLKRIDNNKR YFTQEDFKKI EAQKNLIDDQ AMQGDYAFFN AAYEIFEKRL 181 KESEEISTEI LKNPFDFSKN ETIELDGDKS EYAKNKKAQK EVWRKLLKYQ VMVRLDNLLQ 241 AEEKKEKDEK GYKAKSLTEL EKDAREAIQK NQNEFFKRMY RLKKKDWRNL YLNSITSAYD 301 PHTEYYPPKD KENFDIQFSG QFEGIGATLQ EREGQIKVMN IVPGSASWKQ GDLKEGDIIQ 361 KVAQGDEEPV SIIDMPLDDA VQLIRGKKGS EVRLTVKKVD GTTKIIPIIR DVVVLAETYA 421 KSVVLEPQKG TKIGYIKLPS FYSNFQDKNG RTSSKDMKEE LIKLNDENVE SLILDLRNNG 481 GGSLGDVIDI VGLFIETGPV VQVKARGSLP QVYSDTDKEV VFDKPLIVLV NEFSASASEI 541 FAAAVQDYNR GIVVGSPTFG KGSVQNFLDL DRVLGKEYDN IKPLGALKLT IQKYYRINGG 601 ATQLKGVVPD ITLPDMYSYI DFGEEQEPYA LKWDEVKKAK YQEWTPKYKL DKVQKETDKR 661 VSKDDIFSSI DENAKRLNKR RNETLYSLNL DEYRALQRTL EEESKKYENL AKSDETLKII 721 ALKKDLAENK ADTVKQASFE KFEKELKKDI HLQEAIRIMS QVQ //