LOCUS AFM03645.1 1100 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 putative helicase protein.
ACCESSION CP003345-1133
PROTEIN_ID AFM03645.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_1208"
/note="PFAM: N-6 DNA Methylase"
/transl_table=11
/db_xref="InterPro:IPR002296"
/db_xref="InterPro:IPR003356"
BEGIN
1 MTTKDYLNIV SKRFQSGISR EHSYRGDLET LIRNLVQGIE ITNEPANVTD CGNPDYVITN
61 GKIPIGYIEA KDIDKDLNSK SFKEQFDRYK KALDNLIITD YISFQFFQNG KLIHEIRIAD
121 VDGNNLRLIP ENYAKFENLI KEFCSYVGQT IKSSKKLAKL MAGKARLLQD ILERAVTSDE
181 KTKEDTSIKA QYDTFKKILI HDLEPTDFAD IYAQTLAYGM FAARLHDENL NDFSRQKTAE
241 LIPKSNPFLR KLFGYVAGYD IDERIITVVD NLAEVFRATD IEQLLKNFGK STQTNDPIIH
301 FYETFLAEYD PKLRKAKGVW YTPEPVVNFI VRSVDEILKT EFGLPYGLAD TSKTKIKIKT
361 DIANKNFKSG YKEVEKEVHK VQILDPATGT GTFLAEVVKF IYNKNFQSMQ GAWSGYVEEH
421 LIPRLNGFEL LMASYAMAHL KLDMLLTETG YKSKTNERLN IYLTNSLEEH HEDTGTLFSS
481 WLSNEANEAN YIKRDVPVMC VIGNPPYAVS STNKGEWIEK ITADYKKNLN ERNIQPLSDD
541 YIKFIRYGQH YIQKNGSGIL AYISNNSFID GIIHRQMRNN LLETFDKIYI LDLHGNARKK
601 EVSPDGSADQ NVFDIMQGVS INIFVKTGKK KAKQLGKVYH HELFGKREAK YDFLIENSLP
661 KIKWKTLKSK KPYYFFVAKN FELLDKFNTS LDLRELFSKN SIGIATGKDA ELVDFTKDNL
721 LDKYDIEPTP FYYRPFDTRF TIFDNKILQR ARFDLMSNYL KGNIGLNIVR QSKQKGVESL
781 VSKNITCKHL ITGETYNFPL YLYPESPKTN LFSSKTELKK QELAIQLKAL VAHHKKIDVF
841 FHKTILPFFE KIKNLTQNEI ISLEEHRSTY EESVASVEHV KEQLQNLENP QTELIPTETS
901 RKPNLNTKIV SEVAHKLGLA FTNEKENKKD TFAPIDILDY IYAVLHSPTY REKYKEFLKI
961 DFPRVPYPKD TKTFWELVKL GSEIREIHLL ESKKIEHFIT TYPVEGNDII TTKIAKKDWK
1021 LFDIKNQLGR IWINETQYFD NIPLVAWEFY IGGYQPAQKW LKDRTTRKLS FKDILHYQKI
1081 IVALSETDRI MKEIDKIEIE
//