LOCUS AFM03579.1 726 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 dipeptidyl aminopeptidase/ acylaminoacyl peptidase protein. ACCESSION CP003345-1067 PROTEIN_ID AFM03579.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_1141" /note="PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region" /transl_table=11 /db_xref="InterPro:IPR001375" /db_xref="InterPro:IPR002469" BEGIN 1 MKQYSIKKKM FFVILFLCSF SVFAQTTEEK KDLFTLENAV FYNLSPKNIG QLHWQKNGYY 61 VYQSQNRREL KTAHPVLRIA ERTLISTKIL SEKLELTNQM RRLPVFNWID ENLAWFDYGN 121 KIYTYNFENQ SLKLVTNAVE NASFAESHSV EKLAVVIDNN IWLRNVDEDG KTDLIQITED 181 GTRELTYGEA AHRYEFGITK GLFWSDNAEK LAFYRTDRSM VKDYPLIDYS EYPAKHTPIK 241 YPMAGQKSHE ATVGIYDISS EKMIYLKTND SQKDIEQYST NITFSPDAEK IYVAIVNREQ 301 NHMKLTSFDA NTGEKIKILF EEKDEKYVEP EHSLYFMKNN PNLFVWQSER NGFNHLYLYD 361 TDGKLIRQLT KGNGVVTEIL GTDKDEKFLY FTAGLESPIE NHIYKTEIKT GKITKLTKEA 421 GMHSGKLSED GKFLLDSYSN LETPAITQII ETKKGNSIRK IFEAENPLLN YERGEMKIFK 481 LKADDGTDLY SRVIKPTNFD ATKKYPVMIY VYGGPHVQLI QNKWLGGADY FMQYMAQQGY 541 VVFTLDNRGS LNRGRDFEQA TFRNLGKNEI SDQLKGVEWL KKQSYVDSER LGVFGWSFGG 601 FMTTSLMTKH ADLFKVGVAG GPVIDWNLYE IMYSERYMDT PQENPEGYKN ANLLNSIENL 661 KGRLMIIHGL QDDVVLPQHT RLLINKAIEK QILLDYFPYP SHPHNVRGMD RIHLYMKIAK 721 YFEDFL //