LOCUS AFM03551.1 1277 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 regulatory P domain of
subtilisin-like proprotein convertases protein.
ACCESSION CP003345-1039
PROTEIN_ID AFM03551.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_1113"
/note="PFAM: Proprotein convertase P-domain; Fibronectin
type III domain; TIGRFAM: Por secretion system C-terminal
sorting domain"
/transl_table=11
/db_xref="InterPro:IPR002884"
/db_xref="InterPro:IPR003961"
/db_xref="InterPro:IPR008957"
/db_xref="InterPro:IPR008979"
/db_xref="InterPro:IPR013783"
BEGIN
1 MKKIITIYFF MLLFLSFGIK AQNPADVQNY TVTAGSNESL VDDATGWTTL IGGNQINVAS
61 AVNNIGFEVW FMGERFTTFS ANTGGVMRFG NTPIIGGANS PSIADNARVC VFGASITTAA
121 DKWRTGNNGY VRYKVTGTAP DRKLIIDWVN IRMKGSAPNN TGISRFQAHI SETAPANANG
181 GVVRIVYGRM FIQSHAPTTG CTGNDQTTTY TGIGYSTSTT QGMFINTDNH PSLAGTTINY
241 GANGTDGYPS CNSFGAAPTN VTSLNSTTNG SRKYYEFNPP LPNTNVTFVS ASCVSDNELL
301 INWTAPAGNQ VGYVVYRSLD GVNYSFLTQT NTLTTNFIDT GLTAGTTYYY RVFTVTEGRL
361 SAVDPTVNEV SATTTISPTV FSVISNIWSS TTTWSTSSVP VAAENVVIGC PTPHTVTVNT
421 NGVANDLTIE NGSVLNFNAG QTITTEGDVI NKGTININNG TLRIKGNLIN TTGAVVNVGN
481 GELIVEGDFQ NEATAILNGD TGLFRLAGDF INEGEYNSNT STMRFDGNAQ QLINHTGTSS
541 GQGIITASNS YNNAADLFTP GTPAIPGTPI AIPDNNAAGV SQTVNFPATT QTITNVTLGL
601 QIDHTWVGDL IVRLTSPDGT TRTLIDRPGI PPSTYGCSGN NIDVLLSDAG GSDVEDECGG
661 GTPTINGTFR PNQSLADFIN EDPTGDWILT VSDNVGGDTG DFVSGSLNVT TALGTTSVPI
721 NAAIPATPAT PGLSIPDNSN AGVNHTINVP TTGTIESVRM DIAIDHTYIG NLRITLTSPN
781 GTTRRMMNRV INGTGGCDED NLSITFDDLA LDAVQTQCGG GNPSINGTYT PEQSLTNFIG
841 EDQQGDWIIN ISDRAGGDIG RVMSANLHIT TSVPVPFPLS SALYYHKLEM QNTGAEVRTQ
901 NTDIWITNNA TWTTGVFRAD NNHMIIFPDN ATSTVAINAS HADMKVRKIG DDAFDFPVGN
961 AGWGAPIGIS APVDVTDHFT AQYFHQITPT DFTSKEASIH HVGLCEYWIL DRTSGTSNVV
1021 VTLSYDDIRS CTTGPTAGLK VIRWDGAIWR DHFNGGIINA PYDGVLSLGT VTDFSPFTLG
1081 ALTDLNILPL TFLSFDAKPL ESDAILDWTT TGELNHDYFE IERSINGQDF EKIGSIKNPV
1141 TKDNTKNTYS FIDKNVGIEN SEAYYRLKQI DTNGTFSYSN TKRVNWSIDN SQNKALFVAY
1201 PNPFTDILTL DFDLDRTENV EIVLMDMAGR KIKTISQSFD KGSHKLELNN LQKLAQGSYL
1261 IQLKTNTLQK TFKVVKM
//