LOCUS AFM03488.1 1093 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 putative periplasmic ligand- binding sensor domain protein protein. ACCESSION CP003345-976 PROTEIN_ID AFM03488.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_1043" /note="PFAM: Y_Y_Y domain; Two component regulator propeller; Stage II sporulation protein E (SpoIIE)" /transl_table=11 /db_xref="InterPro:IPR010822" /db_xref="InterPro:IPR011042" /db_xref="InterPro:IPR011110" /db_xref="InterPro:IPR011123" BEGIN 1 MSCFFVQGRF SSLYAQSNMS FEHITIDDGL SQNTPNVFFQ DSRGLLWIGT QDGLNMYDGI 61 KFHHYKRVVD NINSISDNLI LCITEDKEGN IWVGTEGGLN MFDFSKQHFT RYRNNPADEN 121 SIINNTVRSI HCDKNGEIWA GTDGGLVHFL QDSKTFETFK EQKRDESIVR CFLEDKNGIL 181 WVGTNAGLAA FDRKINQFEK RGFRRDAING MVMDNEGNIW AGGARGLFKR TFLTSNYMDV 241 TQNRYLTINN LFIDDKGLLW LMTDDGLQYL KPWYSSPRLR VIRSRNTDPS SLSSNDILTM 301 FEDQAGIIWI GTNGYGINKF DRNRIKFDTY TAARTGLSDN TVRSVLEDKH GILWIGTIQG 361 LNKYKEGIEQ ASVIGMLSKK KIYAIYEDNQ NQVWVGTMEN GIYIFDNSKP SLGVIFKKRL 421 TTRTTKGLLS NSIRVIYQDK AGTIWIGTDK GGLSRYNAST NSFKTFANDP NVLNSLSNNR 481 VRGIYEDLEG TLWVSTYGGG LNKFDEKDES FSVYKSDVND KYSISTNRIY PVYEDDRSHF 541 WVLTYGGGLN LLDRKTGKFK HFTEEDGLPN NVLYGVLEDS KKNLWFSTNR GISKFTPSDT 601 AFVNFGVEDG LQANEFNSGA YAKGKTGMMY FGGINGLNYF HPDSIQGNSY IAPVLFTNFQ 661 VNNKNIEIGD SSIIQKHISL VEKIQLNHKQ NSFAFFFASL HYSFPERNKY QYKLEGFDTD 721 WIESNRGEAQ YTNLDAGEYT FLVKGSNSDG VWNEEPISVK IVITDAWYNA LEAKVAFALI 781 VLLTLFLIYR WRIWRVEQKR KQLEQKIALR TKELTQEKEK VEQQNTLIES ANKKITDSIR 841 YAQRIQDAII PSEEEMLDAF TEHFVLFQPR DIVSGDFYWS WKNNGLSHFA VVDCTGHGVP 901 GAIMSVVGFA MLEQTTKVKQ INEPAKILTE MNTGIVGWLK QNEGNVLHET GKIWKSRDGM 961 DMSMISLDKV NRKIVFSGAK NSLFHTENGK IIEVKGDRFS IGGTLLKQKQ KTFTDKHISL 1021 QKNDMVYLTT DGFLDQFGGG NNKKYSKKRF IELLNKIQHL PLKEQQKKLQ ESFVHWQGLQ 1081 RQIDDMLVIG IRM //