LOCUS AFM03454.1 760 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 DNA/RNA helicase, superfamily I protein. ACCESSION CP003345-942 PROTEIN_ID AFM03454.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_1007" /note="PFAM: UvrD/REP helicase" /transl_table=11 /db_xref="InterPro:IPR000212" /db_xref="InterPro:IPR013986" /db_xref="InterPro:IPR014016" /db_xref="InterPro:IPR014017" BEGIN 1 MIDFIKDLNE KQQLGVLKTE GACLLIAGAG SGKTRVLTYR IANLLENGTS PWQILALTFT 61 NKAAKEMRER IENLVGTTGR DLWMGTFHSM FARILRFDGD RLGYRSGFSI YDTDDSKTLI 121 KNIVKEMGID DKIYQAAGMF NRISSLKNSL ISPQEYNQNA EFLSEDAMAK RPHFGKIYQE 181 YAARCFKANA MDFDDLLYQT FVLFRDHKDI LHKYQHRFKY ILIDEFQDTN IAQYKIIKKL 241 AAVNLNICVV GDDAQSIYAF RGADIRNILN FERDYPDLEI IKLEQNYRST KTIVEAANKI 301 IKNNKNQIPK NVWTENIAGE KIELVRATSD QEEGRITAGN IFETRAQKNA KLNDFAILYR 361 TNAQSRTMEE ALRRLNIKYR IIGGLSFYQR KEIKDLLAYF RLAVNPEDEG ALRRAINNPK 421 RGIGNTTVLK VFLASRENNI PLSKIIRHAS AYLGKGRAGT SVEKFGELAK AFQIMASEND 481 AFTAAKYIAQ HSGIVKALFD DETLEGRARY ENIQELLNAT QEFVQNKISE ATTEEPDTSL 541 SLFLQEVALL SSVDQASEDE DAVTMMTIHA AKGLEFEYVY LVGMEEELFP SSRMITSQQD 601 LEEERRLFYV AVTRAKERLT LSYALQRYRY GSFNSCEPSR FLFEIDQELF NNRSRAMQRN 661 NPNHMTNFMR HRAAKEKESP KTKTGNNLKP LKSVSNNSPF VSSKSEDIVE GIKVEHPKFG 721 FGIVKKIDAS TSGKRAIINF DTEGDKTLIL SFAKLRIVES //