LOCUS AFM03444.1 1694 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 HYR domain-containing protein protein. ACCESSION CP003345-932 PROTEIN_ID AFM03444.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_0996" /note="PFAM: HYR domain; TIGRFAM: Por secretion system C-terminal sorting domain; Chlamydial polymorphic outer membrane protein repeat" /transl_table=11 /db_xref="InterPro:IPR003410" /db_xref="InterPro:IPR008962" /db_xref="InterPro:IPR011050" /db_xref="InterPro:IPR012334" /db_xref="InterPro:IPR017868" BEGIN 1 MKHQDKLFKY LLLFVGILFY TQAQAQRYVD ASATGANNGT SWTDAYTSLQ SAISGATAGT 61 QIYVAKGTYK PTNGTNRNTT FQIPSGVEIY GGFSGKETRV NQVLLDARDF IANETILSGD 121 LNGDDNVTGT FPTLVYGNYA DNSVHLIYTR NVSNATRLDG FTIKGGNAND GSASFDYGVR 181 AGGWYNNGST GGVSQPTVAN CIFTRNIGSE GGAMTNFGCC GGNANATIIN CSFTQNQAAK 241 GGAIYNDACC GGRANSTVTN CSFSQNRAIN QGGGIYNEGV AGGGARATVT NSVFWENAGT 301 RKSWFNASGG AVTASYTLVE EAAFTAGTAN NGNNLFNQDP LFVNAAIGNL NLQATSPMIN 361 IGNNAAIPTD ITLDAGNSSR VRATTVDLGA FETCPSTSAE INIQGGTPLN NIVDGAGIPD 421 ILVSNNTDFG LVPVTRTITY TIRNTGGAVL NISSILSSNT AEYVVSNIPT TVAAGGTATF 481 DVTFNPIACG DNNATIVVNT DDCDEGIYNF VVQGIGGNPE IDVQGNAVSI VDGDVTPVLT 541 DDTDFGNVVT NRTVTYTIQN TGSLALDINS IAITGANAAD FVLSGITPPT SVAASGSTTF 601 DVVFTPSTIG IKNATITINN NDCDESVYNF SIKGRGIVVP EINLQGNGNN IVSGAGTTSE 661 TNDTDFGDVV ECLNSTKATN FTIRNTGSVI LNITGIAVSG TNAGDFVVSS IPATVAAAGS 721 ETFTITFNPS ATGNRVALVT VSNNDSDEGT YTFAINGNGT VDTTDPVIPV LTDINEECSS 781 TPTAPTTTDI CAGTITGTTT TTFPITAQGT TVVTWTFDDG NGNSITADQD VIIDDTTDPV 841 IPVLADINEE CSSTPTAPTT TDICAGTITG TTTTIFPITA QGTTVVTWTF DDGNGNSITA 901 DQNVIINDIT NPTITAPSNI TANTDTGICT ASGVALGTPT GSDNCGTPTF TNNAPAIFPI 961 GNTTVTWTAD DGNGNTTTVN QTVTVSDSKE IDVLGNAVSI VDGDVTSDTA DNTDFGNTTS 1021 RTVTYTIENT GTEVLAISSI VSSGTNAGDF VVSSIPTSVV AGGNATFDVT FTPSALGTRT 1081 AIITVNNNDC DEAVYDFAVE GSNISSGDVL LVRTGIYYPT IQEGVDVSVD TDTLVMTVDR 1141 IYPENVLVDK TLTFQSNATT YQDVSINQIE MNGLGKTLTI DGNMGIIEVL NMEEGDITVT 1201 TAANFALRST TGGTALVIND DDSNTVIGNV IMERYLSTID DLGGTNGRGY HLFSSPFSDA 1261 TVSQFGDDMS LVLTTAYNTA AEPAFTRPFP TFFQYEENNA GATTSAYFNP FISNYKVPTA 1321 TDLTVVRGYQ ANIATGETVD LSGILNNGNK TITVTNNGGG FSQEGYNLIG NPYPSPIDWE 1381 EVLITSVGVE DAIYIDIPVN QYQGVFAEYV NGVPNNGGKK EIASMQGFFV RTLAGGTVNM 1441 TNDARLTADT RFFKTTETQN VKEGLVRVAL KKGNSLDETT IYFQNGATSS FDGKYDAAKL 1501 HKMNSVHSTL YSYNENAETT EYFAINGLGS FDSNQKLSLA MNILTEGEYE ITLRSMKYFH 1561 SKHELYLYDS LTDSLHNLRA EGDYKFAAKK GNEVKRFVLL FKTDANKNFF TDEKVVVYPN 1621 PTSNSFSYSL KTNREGNYTI RLFDATGRII LEESKIKEGA FLEGTINLEK HSSGLYLLQV 1681 SDSEKTTTVR VVKE //