LOCUS       AFM03444.1              1694 aa    PRT              BCT 31-AUG-2017
DEFINITION  Bernardetia litoralis DSM 6794 HYR domain-containing protein
            protein.
ACCESSION   CP003345-932
PROTEIN_ID  AFM03444.1
SOURCE      Bernardetia litoralis DSM 6794
  ORGANISM  Bernardetia litoralis DSM 6794
            Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
            Bernardetia.
REFERENCE   1  (bases 1 to 4919337)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
            Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
            Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
            Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
            Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
            Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
            Eisen,J.A.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     The complete genome of Flexibacter litoralis DSM 6794
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4919337)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
            Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
            Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
            Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
            Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
            Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
            Eisen,J.A.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
            Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     URL -- http://www.jgi.doe.gov
            JGI Project ID: 4089456
            Source DNA and organism available from Hans-Peter Klenk at the
            German Collection of Microorganisms and Cell Cultures (DSMZ)
            (hans-peter.klenk@dsmz.de)
            Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
                      David Bruce (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Finishing done by JGI-LANL
            Annotation by JGI-ORNL and JGI-PGF
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            
            ##MIGS-Data-START##
            investigation_type  :: bacteria_archaea
            project_name        :: Flexibacter litoralis DSM 6794
            collection_date     :: Missing
            lat_lon             :: 32.840 -117.258
            depth               :: Missing
            alt_elev            :: Missing
            country             :: USA
            environment         :: Marine
            num_replicons       :: 1
            ref_biomaterial     :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
            biotic_relationship :: Free living
            trophic_level       :: Missing
            rel_to_oxygen       :: Aerobe
            isol_growth_condt   :: Missing
            sequencing_meth     :: WGS
            assembly            :: Newbler v. 2.3 (pre-release)
            finishing_strategy  :: Finished
            GOLD Stamp ID       :: Gi04020
            Type Strain         :: Yes
            Funding Program     :: DOE-GEBA 2009
            Gene Calling Method :: Prodigal, GenePRIMP
            Isolation Site      :: Sea water aquarium outflow, La Jolla,
                                   California, U.S.A.
            Temperature Range   :: Mesophile
            Gram Staining       :: Gram-
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Finished
            Current Finishing Status :: Finished
            Assembly Method          :: Newbler v. 2.3
            Genome Coverage          :: 30x
            Sequencing Technology    :: 454/Illumina
            ##Genome-Assembly-Data-END##
FEATURES             Qualifiers
     source          /organism="Bernardetia litoralis DSM 6794"
                     /mol_type="genomic DNA"
                     /strain="DSM 6794"
                     /isolation_source="sea water aquarium outflow"
                     /culture_collection="DSM:6794"
                     /type_material="type strain of Bernardetia litoralis"
                     /db_xref="taxon:880071"
                     /country="USA: La Jolla, CA"
                     /lat_lon="32.840 N 117.258 W"
     protein         /locus_tag="Fleli_0996"
                     /note="PFAM: HYR domain; TIGRFAM: Por secretion system
                     C-terminal sorting domain; Chlamydial polymorphic outer
                     membrane protein repeat"
                     /transl_table=11
                     /db_xref="InterPro:IPR003410"
                     /db_xref="InterPro:IPR008962"
                     /db_xref="InterPro:IPR011050"
                     /db_xref="InterPro:IPR012334"
                     /db_xref="InterPro:IPR017868"
BEGIN
        1 MKHQDKLFKY LLLFVGILFY TQAQAQRYVD ASATGANNGT SWTDAYTSLQ SAISGATAGT
       61 QIYVAKGTYK PTNGTNRNTT FQIPSGVEIY GGFSGKETRV NQVLLDARDF IANETILSGD
      121 LNGDDNVTGT FPTLVYGNYA DNSVHLIYTR NVSNATRLDG FTIKGGNAND GSASFDYGVR
      181 AGGWYNNGST GGVSQPTVAN CIFTRNIGSE GGAMTNFGCC GGNANATIIN CSFTQNQAAK
      241 GGAIYNDACC GGRANSTVTN CSFSQNRAIN QGGGIYNEGV AGGGARATVT NSVFWENAGT
      301 RKSWFNASGG AVTASYTLVE EAAFTAGTAN NGNNLFNQDP LFVNAAIGNL NLQATSPMIN
      361 IGNNAAIPTD ITLDAGNSSR VRATTVDLGA FETCPSTSAE INIQGGTPLN NIVDGAGIPD
      421 ILVSNNTDFG LVPVTRTITY TIRNTGGAVL NISSILSSNT AEYVVSNIPT TVAAGGTATF
      481 DVTFNPIACG DNNATIVVNT DDCDEGIYNF VVQGIGGNPE IDVQGNAVSI VDGDVTPVLT
      541 DDTDFGNVVT NRTVTYTIQN TGSLALDINS IAITGANAAD FVLSGITPPT SVAASGSTTF
      601 DVVFTPSTIG IKNATITINN NDCDESVYNF SIKGRGIVVP EINLQGNGNN IVSGAGTTSE
      661 TNDTDFGDVV ECLNSTKATN FTIRNTGSVI LNITGIAVSG TNAGDFVVSS IPATVAAAGS
      721 ETFTITFNPS ATGNRVALVT VSNNDSDEGT YTFAINGNGT VDTTDPVIPV LTDINEECSS
      781 TPTAPTTTDI CAGTITGTTT TTFPITAQGT TVVTWTFDDG NGNSITADQD VIIDDTTDPV
      841 IPVLADINEE CSSTPTAPTT TDICAGTITG TTTTIFPITA QGTTVVTWTF DDGNGNSITA
      901 DQNVIINDIT NPTITAPSNI TANTDTGICT ASGVALGTPT GSDNCGTPTF TNNAPAIFPI
      961 GNTTVTWTAD DGNGNTTTVN QTVTVSDSKE IDVLGNAVSI VDGDVTSDTA DNTDFGNTTS
     1021 RTVTYTIENT GTEVLAISSI VSSGTNAGDF VVSSIPTSVV AGGNATFDVT FTPSALGTRT
     1081 AIITVNNNDC DEAVYDFAVE GSNISSGDVL LVRTGIYYPT IQEGVDVSVD TDTLVMTVDR
     1141 IYPENVLVDK TLTFQSNATT YQDVSINQIE MNGLGKTLTI DGNMGIIEVL NMEEGDITVT
     1201 TAANFALRST TGGTALVIND DDSNTVIGNV IMERYLSTID DLGGTNGRGY HLFSSPFSDA
     1261 TVSQFGDDMS LVLTTAYNTA AEPAFTRPFP TFFQYEENNA GATTSAYFNP FISNYKVPTA
     1321 TDLTVVRGYQ ANIATGETVD LSGILNNGNK TITVTNNGGG FSQEGYNLIG NPYPSPIDWE
     1381 EVLITSVGVE DAIYIDIPVN QYQGVFAEYV NGVPNNGGKK EIASMQGFFV RTLAGGTVNM
     1441 TNDARLTADT RFFKTTETQN VKEGLVRVAL KKGNSLDETT IYFQNGATSS FDGKYDAAKL
     1501 HKMNSVHSTL YSYNENAETT EYFAINGLGS FDSNQKLSLA MNILTEGEYE ITLRSMKYFH
     1561 SKHELYLYDS LTDSLHNLRA EGDYKFAAKK GNEVKRFVLL FKTDANKNFF TDEKVVVYPN
     1621 PTSNSFSYSL KTNREGNYTI RLFDATGRII LEESKIKEGA FLEGTINLEK HSSGLYLLQV
     1681 SDSEKTTTVR VVKE
//