LOCUS AFM03382.1 653 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 Zn-dependent oligopeptidase protein. ACCESSION CP003345-870 PROTEIN_ID AFM03382.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_0928" /note="PFAM: Peptidase family M3" /transl_table=11 /db_xref="InterPro:IPR001567" BEGIN 1 MESYFEFFYS SPNFEEIDAK SIRYITDKII RKSDAALAVV LGGDTQTFEM KMEKWDELTH 61 KLSSISGIIF LLAHTSSNKE VYNQANQSIQ VLQRYGNGLS LNEELYKSLK KYSQSDDARW 121 LKGYKKKFIK ETIREFERNG FALVQQDRDT LRNIKDQLSD LANEFSRNIA EHQDQIIISE 181 KDIEGLPEDY KNRHKMEDGM YKITLDSPSY RPFMRYAKNE KWRKELYIKY LNKGNPKNTD 241 ILIKTIALRN QMANLLGYKT YAQYVIEERM AKTPNTVWNF EEELTNKVKP KAEKDYKELL 301 SITEGKNELK SWETGFYNNI LLEKNYNLNA EEVKQYFELN NIFKGIFKIC KDLFGIDFVK 361 MYHHSVWHED VIVYEVRKKH SVIGKMYLDL YPRANKYSHA ACFGLVSGRE TPRGYQTPHT 421 ALVCNFPPST PNSPSLLSHE QVTTVFHEFG HGLHQLLTKS PLAAFAGTSV VRDFVEVPSQ 481 LFENWAWDYD ILKEFALHHK TEEVLPKELF DKMIAARNVG SGLFTLQQIL YGTYDLTLHD 541 KYNPLTDESP NELFNRLQRQ ITLTAPVEGT DFPSAFGHLM GYAAGYYGYL WAKVYAEDMF 601 SVFEKEGLLN PKVGKKYVDK VLSKGGSEEE MSQIKNFLGR EPKQEAFLKS LGL //