LOCUS AFM03308.1 1306 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 Eco57I restriction endonuclease
protein.
ACCESSION CP003345-796
PROTEIN_ID AFM03308.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_0850"
/note="PFAM: Eco57I restriction endonuclease"
/transl_table=11
/db_xref="InterPro:IPR002052"
/db_xref="InterPro:IPR002296"
/db_xref="InterPro:IPR011639"
BEGIN
1 MDNTTYFAQF TDNTYFNAFF LEYKMQDYFD TDHTEDCKKA FENIKILYSK LDIVELSEAQ
61 LEDKFIKNVL IEIGYAYTYQ ITKKVFGKIH KPDFALFESE EIERISGGKD KSSTENILAL
121 CESKAYKVNL DNRETTTKNP HFQLLRYQSD LRINYGFLTN GKKWRFYDIT NPKQDKIYFE
181 IDLEWIIQND DYKAFQYFYY NFYKKQILKL YNKERGVATK EKTFAELNQE YILEVEKDLK
241 ELIYGKDSII EMIGQRLFAR YGNEYSIKEI YANSLTFGFR LLFVAYFEGQ FRNPVFGMEA
301 VDEFHPLRNL LAFVKMDKHL PEKHNGWNMM KHFFDYLNYG NIDLEMPLLN GGLFAEHKAP
361 LLKLPLVLSN KDIEQILTLL LYHKGNELFQ AYRDYKTLSV THLGNIYEGL LESEFRQAFE
421 GTYYLTFLDG KTEKEGYFDS YDYQEKKKNK KITILEERFY KNDELYLSNQ SGNRKTTASY
481 YTPQDITHFM AEESIQKLLK ENEEKKKSIL DLRLMDNACG SGHFLIASLD VLTSEALKRI
541 ENRTDKKLEQ TIETEKVTIL KTLSQFNPIE YHQIDELRIL KRILLKKIIF GVDLNEFAIE
601 LTRLSLWLDT FILGTPLSFI EHHIKQGNAL IGAKKEELYK SLQTDNNLFA DSFKNKVAKI
661 IEDLSELSNL KDTTAEEIAQ SKAIYKKLEP SLEKLNLAMN FHTYKRFVPF IFESKAEAQK
721 ELDLLNATLT DFEDKIFNKK DAALVEQIEK TAEQFSFFNY EITFAEVFQN GHRGFDLIIG
781 NPPWDKTKFS DADFFSMWRS SYRTMKNKEK EATRQNVLGY KGIQNEYNTK KGFVVFANEY
841 YKNYYPHNAG VGDNNLFRFF IEQNLGLLTK DGTLTYITPS AWIYEDSSIN IRKHIFENYQ
901 LEFFYQFENK KAIFPDVHRS YKFAVFQITQ LDKSKEKRKT LPVRFMQTDT EILYKTEIYD
961 GRKGILEYPY EDIYTLSPLH HALFEIKDQK DLDIIRNAYK RFDIINPSFI DFRNELHMTA
1021 DRDLFKEQPN DMILYEGKMI HQYTNNLATP NYWIKTEEFE AKLIKTEVNR LINNIYEFVP
1081 QEKYKSTKKN TVLSFLGLNE EEELKQFVVF NKDFPRLMYR GIARNTDSRT LIAGIIPSNH
1141 TFGHSMFGHI AKKYAFKNGK VVIDEIPLER VLFVQSIFNS MVVDFIIRFM VDINVVKSIL
1201 MRLPIPQPSD KELSENPIYQ KLIKNALLLN LSNTTNLEEL KEKVNFKIQK SDIPTTQKRK
1261 DKLQAENDLL IAELYGLTKE QLQHLTSPAY FKILNDKNKA YLSLLE
//