LOCUS AFM03281.1 972 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 hypothetical protein protein. ACCESSION CP003345-769 PROTEIN_ID AFM03281.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_0823" /transl_table=11 BEGIN 1 MNFSLFPFFK TYFPTLILVH FSSTEFQIWD KNSIFWAKIE IDKNKIKITS VQQKIILITD 61 LEKLKEQEIK FLEELNNLQA EFQEKLKRFL EQAKIDFIKR KKEIENQFRK GFSTKQKEKL 121 QPIIQLLEEG GHSIYLLPEW ICIFEFWKTI YEKNNFKKTF LQEQKILKSL TNFYNNSHKL 181 INNKSYSKIE SFVTDFSQKN KIKENEILLY GILNKFLDDN SKEEQSKLDF IPIIQEKINQ 241 LKPKNKRIWI NDNQILKSVE FNSEDFKKKT LFGTYESFAD LLLAFSTQNE VSQFAFEAKK 301 PISQVGIFGL SKNSELIQKI EMTNYDLIIL DSDKQNLHST KEISLFQYLS KKEKQLFASL 361 QNGFKSLSKN GILFVSLNEN NFIEKKSLAS LRRLLQEWFE RIEIYQNQKE NKSSLGILFY 421 KKTELEKGIF YSELEQNKSK DKFVNQFLIN TWKPKPILSE YQKLIPAINL RGGKNAIFKT 481 YFRATTNQKL ENFIEFNNKN NLKVKVNKFI QNYNQQITKS EEQEKNKLEK KKTILASKFA 541 QNTLFEKDTI KVIEEKVKVK IEEKINKKTD NNLLEFEESN LIETQISVFE SGFWYYEKNS 601 FSGLETFYDL DKIFPNRKQG ENILIFWSNT STGGDIWATD KPVPPSFLNE ILPYSYIFPF 661 YIYENEQKKS NLSSSMLQKF RRGYAAVFEK RIEKVEQYLQ ILFDLSDFEF LQVNQELAFE 721 LRALSNIVDK DEYKMTKALK ENLHNPETNT YVQFEQIIKV FTNAKRTFEG LENKATRNKE 781 SHQILQNYFE KSEKAIDFIE NYWQKLETEE AKNFVVPTEE NMTDELILAY IFAVWQRDLF 841 KNKYKEELKN EIPRIPIYKD FHHFANQGEF LLQKYLRLNS TKIEFEIVEI FEDKTKKSKT 901 KKVWFEKENK IWFDKITFLQ TDSELDFDKI REFEVNGKSF FELTLSYLRK NKVDLNEGKK 961 VLEIVIDFVN RF //