LOCUS AFM03226.1 646 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 transglutaminase-like enzyme, predicted cysteine protease protein. ACCESSION CP003345-714 PROTEIN_ID AFM03226.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_0766" /note="PFAM: Transglutaminase-like superfamily" /transl_table=11 /db_xref="InterPro:IPR002931" BEGIN 1 MKKYSFLFLL SLFGFSVLND VVSQNILLEK NRKIYPREKS IFIYRKKKVN IDFDVKKDSF 61 KIISQVESHM LHLRLHSQAY AQEAITYSDY TKISNIDAYS LVKMTDGVKK KQVTNFQTRD 121 AVSEDVFYND VKEKVFLFPN IIAGTQTHLA YTEELLEPRF LGSFFFTSYI PSQKTEFSVS 181 VANNIEIGFQ LFGMDTSTII FTEKREENRK IYTWVLEKAP KYTDENSSPN LRYYEPHIVL 241 FIKNRIIKGN NKKTIPLSSS VKNLYDWYYP FIKEIDTLKE FPELEYFVDE LTANDTTELT 301 KAKRIFDWIS TQVQYIAFED GERGFRPAHP KKVCQRKYGD CKDMASALLA MLRVEGIEAY 361 FGWLGSRDLP YTYAQTPVPL VDNHMIVVAK INGKNYFLDA TGSQETFGTP SYFTQNKEVL 421 VAIDSNTFEV LTVDSAPYSQ NTVYDSAKVK IEGANIIVTG NMILKGFPKT TIIPYLNFQD 481 KEQENKAFKH LLNPHEPTLQ LKKIEIVPTK RKKPLQINYE YEIPNHTQSL YSDFYINLHL 541 NPVWRNTEID SLRKTPVNAN YKFEKTQVYV LELPRGTSIK HLPQNQNYDS EYFGFSVEYT 601 RSSEQIILKH TVYSNYLILP VSEYNNWNEM VKQLHQAYRQ NIVLQR //