LOCUS AFM03218.1 909 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 hypothetical protein protein.
ACCESSION CP003345-706
PROTEIN_ID AFM03218.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_0758"
/transl_table=11
/db_xref="InterPro:IPR008969"
/db_xref="InterPro:IPR014766"
BEGIN
1 MRYFSTLLLL YFCLLFSFSS NAARVFGKVT ASDGENMPFL TVYEEGTTYG TTTNQEGSYF
61 LELSEGEHQI VFRYVGFQSQ THTVIIKKDE NIELNIVMKS STIGLKEVVI TPNGEDPAYA
121 VIREAQKKRE FYRTQNKAFS CDVYIKNVQK LDEFKVPKIL EDDDIEEFRK EWEKNKIVYF
181 SESVSKYYFL APNKRKEVVI SSKVSGDSGG FSWNSALYLS FDIYENTIDA PIGDRPFVSP
241 IAAGAMLYYE YQHEGEFMDK GVNVHKIRVF PRSKGQPLFS GLIYIQDSTW RVHSTDLEVS
301 KDVGLEFIDK LSIKQTFVPI VKNNTDDIWL CSTQAFSFNY SIAMMGAKVA GHGNYTGSFS
361 NYDVTPNFTK AQLSTDTKGQ KLPNLAFSKK KKKKIVDRKE TIENKNTEQE KEEIITKNET
421 QNTEKDSISN LKNDLETMVL ERKFFNKEIS IVSDSSNLKS AEYWAKMRPV PLTSEENEHY
481 VKSDSIEKAQ KDPVYLDSMD RKANKFKIMD LLTGYTYRNR KRELTFNFVP ITQNIQTNTV
541 EGYVLNAGVN LRKFRERNFS TTQVSLNGRY GFSSNKFYAK GSFLHRFNQI SNTYIYLQGG
601 SFVQQFDGDA ISPFMNSIYT LLREENYQKI FEKRFVQFNT GTRIFDGAFL RLEGAFEQRI
661 PLQNANPTLK PYFDRDEIEF TQNLPIDFDG NNVFFEKHNS FIFKAQLRYK IGEKYMLRPK
721 QRVTIPSNYP TFTLTYSQGV PTLFDSKTDF GQLLLNVKDD VSLGVVGSLN YEAQAGTFLW
781 NNYTSFVDNF HFQTSPLLLA QSRLRQFLLL PYYQYSTTDN FAEIHAEHHF NGYLMNRIPL
841 IKKLKWQFVA GAHYLYTPNT PNYTEVSVGF ERIFKVLRVD AVWAVNPSLK NEIKTGLGTN
901 FGLRLRFGF
//