LOCUS AFM03186.1 1517 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 hypothetical protein protein.
ACCESSION CP003345-674
PROTEIN_ID AFM03186.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_0726"
/note="PFAM: Family of unknown function (DUF490)"
/transl_table=11
/db_xref="InterPro:IPR007452"
BEGIN
1 MIRVGKVIRF TLKLILGLLI FLLLITLAAQ YSGTQTWAAK IGANYLTERL GFPISIEKMY
61 FSDIDKITLI GLKVIDNTDR LFIDSDTLNA DLGWRAIFGG EVIQIDDLEL RGTQFNMTLN
121 PATESWNINE LIRAISALSP PKDTTKVTKN IPFQITKANL YNVQFSLHNP TKDSLETGLF
181 DYNHFTINNI YGEIDYFRLF KDTIELNVNQ GSLIEPFVDF PVSNLDVFFR YTKNSLEFLN
241 LDAQIGSSHL TDTLIFRYDS INYLSYNFIE KVDIYANLKN AEIDFADLAR FAPSLKKYKE
301 RVVATGLVRG TVDDLSSKDL RIDFANQSFV DGKFAVRGLP DYENSFLDLR FKDARITVAD
361 IKQYISKSNY QTILPLGKIN FLGEFLGFPS DFVANGKFET SIGNVRTDIH LNTINKTYKG
421 KLNLAHFQAG KLAKSNFLGQ ITGKGKINGK GFTKEEADFE LKAKVDSITL KNTFKYYSYK
481 NILVDGRFKK PTFTGEMTIK DANLIADMRG KIDLQDSVIN GRIRILKSDL QNLGLSKKIA
541 NLQGNGNFNL KGLTLNTITG TAEIRQAQID YNKNKLALSE ISLNSTFENG FRDIHLESDY
601 VDFDIKGEFQ LQDAIDDAIS TFKEYQLEFL DDSASQIAYY KEKKDKFENN PFEKLPYKID
661 YSIDVKKINP LIRLFEPDFF IASDSKFDGV FERDLEKKQV KFTLDSYIDS LSYQDLAFYK
721 TDLKINAIKP LDSMGVDVQT NISSEKQYYS SIVSAENMNV NAQWLGREIL FDSYIKRQNE
781 NDNVSLKGSL KITDSLYSLN LINPEFLILD KKWKSDSLVK IGIQKNEIRF EDKFVLQSDN
841 QRVEIIGKVS KDPNAILNVG LVNVDLEPFG IFLGQDIKGK ANGEAFISGV YDTLKLENNL
901 SLQKLKMAGV RIGNLHTESV WNNEEQKLNI EAHLAYRRRE VVDISGYYSP KEKENPLNLD
961 AKIIGMKLNI VEPFLNVVAD NFKGYVYGAV KIKGKPEQIK LVGEAFVSGG SFRVDYLNTV
1021 YHFDDKITFT ENQIGVDRLR LYDDGENIAF LDGGIFHDGF KDFVMQLRGE MNKMKVLDTK
1081 EQHNDLFYGT AFATGDFELF GALEQLGITI NAKSEAGTRI YMPLSNPEDV SSTQSFIRFV
1141 NHTDSTKLDS LQSRLKKEDL SSLKMEFNLD ITPDAYVEMI FDKKVGDVIR GNGQGRLKMM
1201 IDTKGDFNMY GDVEIVKGSY NFTFLNVINK EFNVDRGSHI TWSGDPFAAQ LDMTATYQQM
1261 ASLAPIITVS DSSVLASTEI KRRYPVVVDL FLKGDLLTPD IRFDINVTEY PSLIIAGGMP
1321 ISLESYVAAF KTRIQNDDQE MNKQVFSLIL LRRLSTQNTF EGIDRSAGSS VSELLSNQLS
1381 NLISQVDENL EIDLNVQGLD ADALNTLQLR LSYSFFEGRI RVTREGSFTN VQNQTDLASI
1441 AGDWTVEYLI FPDGKLRMKV YHKNNINTFN TALQNNSTAG ASLLKIFTFD SFKDLFKFKK
1501 KKKQVPFVQD NEIRIEE
//