LOCUS AFM03091.1 661 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 DNA/RNA helicase, superfamily I protein. ACCESSION CP003345-579 PROTEIN_ID AFM03091.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_0627" /note="PFAM: Type III restriction enzyme, res subunit; TIGRFAM: DNA helicase, putative" /transl_table=11 /db_xref="InterPro:IPR006935" BEGIN 1 MKNSEQQLTH LQELLKIEKR EDAAQYQVKI IQAPLAKRRK DGLCWFPVAI NDEFVGLGGR 61 WNIDIERTND KGQPHQLNVG SIVTVFEQKH GLEVDKTNGV VSKVENDKMR IALNNDELPD 121 FLESQSNSIG VYSAFDDSTY REMNHTIEQV KKANNDRLAD FREIFLGEKE PVFDKIKEVK 181 TDKNEYSDFE NALNHLNESQ KNAVQNILRA QDIAIIHGPP GTGKTTTLVA AIVETLKNER 241 QIMVCAPSNT AVDWLTEKLN AQNVKVTRLG HPARVSDTLE HLTLDGKIEK HPDYKYYKSL 301 LKQSEQMRRK ALKFKRNFGK QERSERQHML RDAKRLKQDA LKLEEYISKH VLEHSQVLAC 361 TLAGSANYML NHRTFSTLFI DEAAQALEGA TWIPILKANR VIMAGDHQQL PPTIKSFEAA 421 KSGLENTLFE KIIKNHPQTA NMLSVQYRMN EQIMEFSNQK FYNGNLKAFE TNKNHVLYQN 481 LAPVEFVDTA GCGFSEMQNE ETLSRYNPEE AKLVVSHLQV LFEEILLKID NKEIENSKEF 541 IDNFSVGVLS TYKAQVYLLR DLIRKNEVLS NYSNQITIHT VDGFQGQERE VMYISLVRSN 601 EKGEIGFLKD FRRFNVAITR AKKRLVVFGD SATLGSDEFY KDFLDYTESI DAYKSAWEYM 661 V //