LOCUS AFM03029.1 1038 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 cation/multidrug efflux pump protein. ACCESSION CP003345-517 PROTEIN_ID AFM03029.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_0562" /note="PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family" /transl_table=11 /db_xref="InterPro:IPR001036" BEGIN 1 MSITELSVKR PSLILVLFTV LVFFGLQGYS TLTYELLPEI NSPILSISTI YPGASPNEVE 61 SSVTKEIENA VSTLENLDKV NSISQESYSL VTVELKYGTD VDQAVQDAQT KIDAIASELP 121 DDAEKPSIGK FSLNDMPILR IGATSDMDVV EFTSLFENKI TSDLARIQGV AQVNIVGKEE 181 REINVNVNGD KLNYYNLSLL QVSQAISAAN LDFPTGSVKN DNQDISVRLS GKIKNLDQLR 241 ELIVTTMADG SNVFLRDIAE VYDTKKETTT ISRINGKTSL GIEITKQSDG NTVEVSKQVR 301 ERLETLKTEY ADINLDFTIA SDSSIFTMEA ADAVTHDLVI AVILVAVIML LFLHSIRNAI 361 IVMVAIPVSI ITTFAVMSVA GFTLNLMSLL ALSLVIGILV DDSIVVLENI QMYMEKGKSA 421 RQAALETWKE IGLSVVSITL VIIVVFLPIG MVSGIVADLL RQFSLVVVAA TLISLLVSFT 481 LTPFLASRFA KLTHLKKSNI LDLPLIWFET FINGVKDGFE SILIWTLNNK IITSVVIFAM 541 VAASFLLLKN GFIGAEFAAQ GDNGEFLVNI EMPKDTPIEQ TNVVTREVED YLAENPDVVN 601 VFTTIGKGTG GATSSYLAEL NVKLVPAEER EMTSKQYARS VKAELKKLIA GAKFTAAPVS 661 MISGAATAPI QITLQGNDLD KMLEASENIQ TAMKNVAGTS EVEPTVEGGN PEVDVAIDRD 721 KMASLGLTLN VVGATMQNAF TGNTDTRFTE DNYEYDIRVQ LDAFERQNQK DIKELAFLNN 781 KGKLIRLSQF ALVKESTGAS RLERKDKIPS LTIESYVIGR PVGTVGADIE AAIAKMDLPA 841 GITVSSGGDL ENQSEAFGSL GSALVTSLLL VYLIMVALYD SWIQPFVVMF SIPVALIGAL 901 LALAMAMQNL SIFSILGIIM LVGLVVKNAI LIVDFVNQLK RDGMESRAAI IEGTMERFRP 961 ILMTTIAMVI AMVPIAIASG AGSEWKNGLA WALIGGLTSS MILTLIIVPV AYLVSDRMTE 1021 KYENWKAKRK DAKLELTD //