LOCUS AFM02986.1 1155 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 PAS domain S-box protein.
ACCESSION CP003345-474
PROTEIN_ID AFM02986.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_0511"
/note="PFAM: Histidine kinase-, DNA gyrase B-, and
HSP90-like ATPase; His Kinase A (phosphoacceptor) domain;
PAS fold; TIGRFAM: PAS domain S-box"
/transl_table=11
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR000700"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="InterPro:IPR013655"
/db_xref="InterPro:IPR013767"
BEGIN
1 MPHTNPLFEL STEALCILDT QNCILHANTA MEEFTQQKKQ ALVGNDFLKE IEKKFECQNT
61 ITTKNLLAKF IYQLEKTRKQ INIKIIDSYT FTLHKNNINS RKEYKISAIS TQNQQIYISI
121 VHTSDNLASN LADTFIETSA IQTKQLNIIL ATVPDGIFII NEKGIISLVN PAAEIIFGYK
181 EEELLGKSIE ILLADKPIPD TLAQLIIDSS SDLKTINNVE LITKHKNQNE FPISVSLSET
241 HFEDGKTVYI ALVRNLTKSK EEKNKLRDSQ NFGESIFQAA KIGLAVINQW GYFVNVNKQY
301 ALMTGYEPEE LIGKVYSIIA PNFELEDAIN TIKHTRTENT TIKRFWKLLR KDNSLIDIEL
361 YINDFYNRHE EQFFILSSKD ITDEKNIEKD LRNTKNLLEG IFQSLDNVFW SYDIKKDKLL
421 TISAAIEKIY DISQEELKND PNAWLKKVHP EDLKLIIEVR KKAREGQSMS YEYRIIDAKG
481 NIKWIQTDVK VTVDKNKIPI RIEGVDTEIT QRVLANQELD STKRMLQFIL DSLPDGVIFT
541 SPNLEIEWIN PAIKNLLGYE EEEYIGKVFS SLFEENSFSL VADHFNIIDK TSIFEIILRG
601 KNGNLIYSET ISTPVYDSNK IIIGYLYVIR DISERKMFEE EKAQIMRSLA QFKRTLDVTK
661 DSVFMFDATT HLFIYANKGA TEAVGYSFEE LRNMKLIDLM NDINPQDFEQ LTSYVINNTN
721 HQINIDTYFL HKSEGKFPVN LLLQYVDLDD GENRFVAIVR DISDRKTSEK LLKESELKFR
781 STFEQAGIGI AHIEIDLSWA TFNVHFCKIT GYSQDELSIR KLREITHPKD LPRDIMQLRR
841 VLNEKSEGYS MRTRYIHKNG DTIWLNLSLS VVKDDDKKPA FIVMFIENIS DQVEAEEMLR
901 QTLEELKVSN YELDQFVYKA SHDLRSPLTS ILGLLNIAEI DREHALSHVK QIRGRIHKLD
961 EFVQSIINYS QTSNLETKYE PLHIEYLIHT NIADLDFLPY SNEIKFKIKS NQKGVIYTDN
1021 LRLNVILRNL LSNAIKFADK TKKTSIILIE TKLRKDKKFV LTITDNGLGI DTAYQERIFD
1081 MFYRGNEKSD GNGLGLYIVR QAVEKLGGEL KFASELGKGS TFMIILPNFK PQTEKKLKKL
1141 FIPPNLNNKK GNRNN
//