LOCUS AFM02795.1 832 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 capsular exopolysaccharide biosynthesis protein protein. ACCESSION CP003345-283 PROTEIN_ID AFM02795.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_0308" /note="PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family" /transl_table=11 /db_xref="InterPro:IPR002586" /db_xref="InterPro:IPR003856" BEGIN 1 MSDFDENPFI NTVPTAETSN EENMLADFDV SKLIRVVKKN IIYVILLLII CVAASWVVLR 61 YTHRIYNSSS TLKLEMKGTS ELLGKGIFAS DENAINFLSG EIELILSRSV YEEAVKKLDL 121 SVSYFVKGRW WFNYFERFQD SPFEVTDYEV YDNSFYNHPL NIQIIDEEEF VLTYETPTGD 181 NFSKIYKFNT RIKNQYFTLI ISLNNTFDKL QSPSSNYFFT LNSHEYQINY IASSIKANVV 241 NPKAYTIQIS FTDNNPYKAA IITNTIVDIY FEKTLENKNK VYKQTIDYLD AQTTIVQDSL 301 EQVEKRMDDY KLENGITSQN PQEYQSLVQN ILNDIRDLQA KRLDIDNELK LYKEISTLLE 361 NDSTLLIALT YSTILKEPSL KIRLEEVYEE EKEKKFMLDR VTKQTGAYQQ KAKRIDLLKK 421 EVDKFITLHQ RLIYEQLSEI TINIYKLQSS IPSSASEIDL ELKKMMRYQN SYQQNYNILL 481 GKFIETNITM SGTVTNYQRL ATAVPGKAPI YPEPQLFYIY GLGAWLVLSV LLIGFTYIRQ 541 NKIDSLTELE KLSSVPILGM IPKYTKPMDY SQLIIHKSPK APISEAFRSL RTNLDFMGNI 601 SNDSIISVTS TTSGEGKTFI AVNLGGIIAL SQTKVVLLDL DLRKPKVHLA FGVENTRGIS 661 TLLVGKTSID EAINHSEIPN FDFITAGVQP PNPSELIMSD EFKDLLKELK LRYDVIVFDM 721 PPVGLVTDGI IAMRLADLPI YVVRTGYSQR SYIKGINRLH QVQNFKKMSI ILNAATKDTG 781 NGYGYGYGYG YGYGYGYGYG YGYYDEDDSE KMALSKKAKK WWYKTKRKLS KK //