LOCUS AFM02570.1 2463 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 hypothetical protein protein.
ACCESSION CP003345-58
PROTEIN_ID AFM02570.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_0059"
/transl_table=11
BEGIN
1 MQRTHFAQSV YTLNLLFANS IYFRFFATFC FFCGISVANT VFAQDTTRVD NIDSLLFFDQ
61 QIKSNSTEGE TQNPMLEPDL SSPLLQLPDP RSLDAVYRLD DTGEFYDVLR RDAPNSYTPL
121 GRISVEDYTK LKTYYDDVAY YKEKIQEESE EQAATTSSVP KIEVALPSGL GRLLGGDKIE
181 IQPTGSVLLD FGGKWQRIDN PQIPVRQQRN GGINFDQRIQ FSILGKLGEK MQLNANFDTK
241 AAFQFENQFN QGYTGYEEDI VQEVQFGNVS LNTTNTLITG SQNLMGITTR LRFGKLWLNT
301 LIANQRGVSE SITIRNGAQG QEFEIRADQY ETNQHFFLGQ FFRDNYEQAL RAVPSIVSGV
361 NITRVEVYVT NRNNDTETLR NIIGFMDLGE GSPFRERFAG QGGATRNEAN NLFQQVKDLT
421 RTPDQLTELL ESGAYNFENG TDYSFLRSAR KLSNNEFTFH PQLGYISLQQ PLRNDEILAV
481 AYEYTYNGQV FKVGEMTEDY QNKGANDAIF MKLLSPPTIR TDLPIWDLMM KNVYSLQATQ
541 LQQENFKLQV IYRDDITGID NPSLHEGKNT EDVPLVQITN LDRLNPNLDP QVDGNFDFLE
601 NITVQSDQAR IIFPVVEPFG DKLLELFDPV DEVQFIDKYV FNELYDGTQA DAALYANKSK
661 YFLTGSYQSG SGSEVILPGI NISEGSVMVR AGSVMLTEGA DYTVDYQFGR VRILNEGVMA
721 SGKDITIQYE RADLFSVQQR NVMGLDAEYI LNKDVKFSAT LLHLNERPII TRVTTGLEPV
781 KNTMIGATAS IQKESGFLTR MVDAIPGLDT KEKSTVTFRG EYAQLIPGEN NIISQNGGEA
841 ASYVDDFESS EIPYDLTRQP ITWKLGSTPQ AFRPETGFDG LNYSYKRAKM SWHSVDVTAF
901 FTSGLVSQVP DNISDQDKLN HYVRQIEFDE IFQERDDQQI NSPETTLDLA YYPSYPGQYN
961 YNPELNVDGT LSNPKENFAA ITKGITYNVD FDNINIQYIE FWMLDPFIQG QNGRVETPNG
1021 TGVSNTTGGK FYINLGNISE DVIPDRRHGF ENGLPANDAD LNDVEETEWG RVTTQQYLTD
1081 AFSAEDGARE RQDVGLDGLN DEDERFFYRD YLAAVQPRLS ATAFEQLEAD PSKDNFKYYL
1141 GDEQDNANKK ILGRYFDFNG TEGNSPENSG TASSTTLPDN EDLNRDNTLS DLDGYYQYEV
1201 DLRPNQLANN KYVVDEVTYQ TDAGESVKWY QFRIPIREFD DKIGSIDGFK SIRFIRLFMT
1261 DWEQPVVMRM AHFQFVGAQW RPYSSSLQDE SLSRPVEPYD PSFVISTVNI EENGSDAGAS
1321 SNGISYAVPP DFERDTDPTS ITQARLNEQS LQLCVEDLQD GDSRAAYKNI IYDFVFYKRL
1381 KMFLHANSAT AQNGEVTAFL RLGTDFKENY YEIEVPLTMS AAGSSLSTQI WLEENEIDLP
1441 FDALYDTKTE RNASGLSVRV PYERIYEKYK LRVVGNPDLS SVQTIMIGIR NPKTSDEQPK
1501 SVCIWANELR VTDFNTEGGW ATNLQLQTQL ADFATVNAAL RYSTPFFGGI QDRISDRTRE
1561 TNLFYDVSAA TQLDKIFLNR LGISLPLFVG YEQTRITPLF NPLDPDIRLE RSLETSFDNE
1621 QDRQNYRKLV QDRLTRRSIN LTNIRKQKVN PDAKANFWDI ENFAASVSYT DSKRTNITLA
1681 TDELRETKVG LVYNFGFDAK PFEPFKKNEL LNAPYLKFIR DFNFNYLPNN ITVTGQVNRY
1741 FAKTQYRNSD LTTDGVVPYF QKSFFFDRNY TVQWNFTKSL LADYNATASA IIDEPAGELN
1801 TQEKQDSVWS NIQSLGRMKY FSQATTLNYR VPLDKFPALD FFTADIRRTS NYTWTANAVG
1861 VADTLGNMAR SSSQFLVNGQ IDMQKLYNKS PYLRELTAPK RPSRQGGNNT SRPTAYKEEK
1921 QKRLEYRITK FNKKEDRKNK IRGIKLDRLI DSVLIDTVLI AQVDSVKEFS VNKRYDRKVA
1981 RIDRKRERIR KKLAKLREEQ KTKNGNSSSS NGIGGGAVKA LLSIKRITIN YSINGNTMLP
2041 NLLTTPKYVG LDENFNSPGL PFVLGSQSRD NILDMANSGY LSKSAAQTNP IVQDQAKTLS
2101 IRMDIEPLKD FQLQIEGQRT QGANYSEVLR YDPFTDDYIS ETAVRTGNYN ISYFSLSTAF
2161 TGDDEFGNSP LFDDFIANRN TVKSALDAEN QAGSYDLGSQ DVLIPAFLSA YSGRNTTSQF
2221 PKIPLPNWRL TYNGLTKLEV FKDRFRSISI THGYSSTYAV GSYTSSLLYD FSYLNLGITE
2281 YNVPLADLVD AETGDLQPVF VVNQVSITER FSPLIGINIR TNNDITFRFN FNKDRTLSLN
2341 LSNAQLAEQR NNDFVFDVGF VKKGVKVPFS DIILKNDLTF RCAVTLRDTK IIQRKIGTDG
2401 TQDSDFTGGN FNLQFKPTLA YVVNKRVSLT AYFDRAINKP RLSNSYPRYN TAFGVQVRFN
2461 LAQ
//