LOCUS AFI88125.1 670 aa PRT BCT 27-JUN-2016
DEFINITION Aggregatibacter actinomycetemcomitans D7S-1 TonB-dependent
receptor protein.
ACCESSION CP003496-2029
PROTEIN_ID AFI88125.1
SOURCE Aggregatibacter actinomycetemcomitans D7S-1
ORGANISM Aggregatibacter actinomycetemcomitans D7S-1
Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales;
Pasteurellaceae; Aggregatibacter.
REFERENCE 1 (bases 1 to 2308962)
AUTHORS Chen,C., Kittichotirat,W., Chen,W., Downey,J.S., Si,Y. and
Bumgarner,R.
TITLE Genome sequence of naturally competent Aggregatibacter
actinomycetemcomitans serotype a strain D7S-1
JOURNAL J. Bacteriol. 192 (10), 2643-2644 (2010)
PUBMED 20348265
REFERENCE 2 (bases 1 to 2308962)
AUTHORS Kittichotirat,W., Bumgarner,R.E. and Chen,C.
TITLE Evolutionary Divergence of Aggregatibacter actinomycetemcomitans
JOURNAL J. Dent. Res. 95 (1), 94-101 (2016)
PUBMED 26420795
REFERENCE 3 (bases 1 to 2308962)
AUTHORS Chen,C., Kittichotirat,W., Chen,W., Downey,J., Si,Y. and
Baumgarner,R.
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2010) Microbiology, University of Washington, 960
Republican St. Rosen Building, Seattle, WA 98109, USA
REFERENCE 4 (bases 1 to 2308962)
AUTHORS Kittichotirat,W., Bumgarner,R. and Chen,C.
TITLE Direct Submission
JOURNAL Submitted (23-APR-2012) Department of Microbiology, University of
Washington, 960 Republican St. Rosen Building, Seattle, WA 98109,
USA
REFERENCE 5 (bases 1 to 2308962)
AUTHORS Kittichotirat,W., Bumgarner,R. and Chen,C.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2014) Division of Periodontolology, Herman Ostrow
School of Dentistry, University of Southern Californak, 925 W. 34th
Street, Los Angeles, CA 90089, USA
REMARK Sequence update by submitter
COMMENT On Jun 27, 2016 this sequence version replaced CP003496.1.
Source of DNA for this strain is available from: Casey Chen,
Division of Primary Oral Health Care, USC School of Dentistry, 925
W 34th Street, Los Angeles, CA 90089-0641.
Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: 24-MAY-2014
Assembly Method :: 454 Newbler assembler v. 2.0.00.22
Assembly Name :: AaD7S-1v2.0
Genome Coverage :: 17.58x
Sequencing Technology :: 454 Illumina MiSeq
##Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 07/17/2014 13:42:00
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 2.6 (rev. 440435)
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 2,197
CDS :: 2,041
Pseudo Genes :: 83
CRISPR Arrays :: 3
rRNAs :: 19 (5S, 16S, 23S)
tRNAs :: 53
ncRNA :: 1
Frameshifted Genes :: 69
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Aggregatibacter actinomycetemcomitans D7S-1"
/mol_type="genomic DNA"
/strain="D7S-1"
/db_xref="taxon:694569"
protein /locus_tag="D7S_02434"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_005544755.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MKKTLLYTTI AMACLPAYAE EVFTLGQIEV IADRSTDLST TRIEQADLQK NNQTNVAEVA
61 KTTPGVFFDR SGARNEHNLL VRGFKANRVP VFIDGIPVYV PYDGNMDIGR FTTFDLSRID
121 ISKGASSVLY GANTLGGAVN LITQKPTKPF EGTIGYGFAH GRSGSTGTNQ TYFNLGSKQD
181 YFYAQLSGSF LEKQGLQLSR HYHRVLPSGD DGARAENSVQ RDKKLSLKVA FTPNATDEYA
241 LVLSTQKSAK QQPLYSGKTA RSERYWRWPQ WDKDSIYFLS HTQFDSHNIY LNTKAFFDTF
301 KNELDSFDDA GFSRQTGSNR NSYYRDYAYG AGFELGGDLT SNDTLKFSAI LKQDVHREHN
361 SNEPTAVDKD RTYSFGLENT YRFSERTKLI TGMSFDRREA KRAENYQARC PATNVRSQSI
421 CPFDVADKNA FNYQIKLVHS FDEQDEFSLG FAKKTRFPTM KDRYSYRLNR AEPNPFLDPE
481 IAYHYEAGYT RTFGNWLRLD GALFYSEVRD AIELVAHPTI SNKEQNQNYG KEVFKGVELA
541 AAIFATDNLT LGANYTYTRA KNKTYTNFIV RDIPQHKFFA YVDWKIVPNL SLYVSQEAEH
601 GRYSRDGFGS RAPTVRLSGF GNTNAKLTYN VTEQFTVEAG VFNLFDKNYY YEAGYPEAGR
661 VYFSNLKYRF
//