LOCUS AFI88088.1 353 aa PRT BCT 27-JUN-2016 DEFINITION Aggregatibacter actinomycetemcomitans D7S-1 hypothetical protein protein. ACCESSION CP003496-1994 PROTEIN_ID AFI88088.1 SOURCE Aggregatibacter actinomycetemcomitans D7S-1 ORGANISM Aggregatibacter actinomycetemcomitans D7S-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter. REFERENCE 1 (bases 1 to 2308962) AUTHORS Chen,C., Kittichotirat,W., Chen,W., Downey,J.S., Si,Y. and Bumgarner,R. TITLE Genome sequence of naturally competent Aggregatibacter actinomycetemcomitans serotype a strain D7S-1 JOURNAL J. Bacteriol. 192 (10), 2643-2644 (2010) PUBMED 20348265 REFERENCE 2 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R.E. and Chen,C. TITLE Evolutionary Divergence of Aggregatibacter actinomycetemcomitans JOURNAL J. Dent. Res. 95 (1), 94-101 (2016) PUBMED 26420795 REFERENCE 3 (bases 1 to 2308962) AUTHORS Chen,C., Kittichotirat,W., Chen,W., Downey,J., Si,Y. and Baumgarner,R. TITLE Direct Submission JOURNAL Submitted (01-MAR-2010) Microbiology, University of Washington, 960 Republican St. Rosen Building, Seattle, WA 98109, USA REFERENCE 4 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R. and Chen,C. TITLE Direct Submission JOURNAL Submitted (23-APR-2012) Department of Microbiology, University of Washington, 960 Republican St. Rosen Building, Seattle, WA 98109, USA REFERENCE 5 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R. and Chen,C. TITLE Direct Submission JOURNAL Submitted (18-JUL-2014) Division of Periodontolology, Herman Ostrow School of Dentistry, University of Southern Californak, 925 W. 34th Street, Los Angeles, CA 90089, USA REMARK Sequence update by submitter COMMENT On Jun 27, 2016 this sequence version replaced CP003496.1. Source of DNA for this strain is available from: Casey Chen, Division of Primary Oral Health Care, USC School of Dentistry, 925 W 34th Street, Los Angeles, CA 90089-0641. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 24-MAY-2014 Assembly Method :: 454 Newbler assembler v. 2.0.00.22 Assembly Name :: AaD7S-1v2.0 Genome Coverage :: 17.58x Sequencing Technology :: 454 Illumina MiSeq ##Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/17/2014 13:42:00 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 2.6 (rev. 440435) Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 2,197 CDS :: 2,041 Pseudo Genes :: 83 CRISPR Arrays :: 3 rRNAs :: 19 (5S, 16S, 23S) tRNAs :: 53 ncRNA :: 1 Frameshifted Genes :: 69 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Aggregatibacter actinomycetemcomitans D7S-1" /mol_type="genomic DNA" /strain="D7S-1" /db_xref="taxon:694569" protein /locus_tag="D7S_02395" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_005552898.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSNYNFRIKN ISNRLNPDNL ELATNLSDEE YPSIFYTDVT RYVKLAMKGV DPLYTRKSKE 61 AGEKVKSHLL NELDNVEYEY QGSVMTDTHI KGNSDIDLLV ISTKFYTFDR EGITKLINDP 121 VEIRNLNQLQ INSLKKELSG TGYHGALEDL RHNRIQSEST LKGIYDICDC THPKAIKIKN 181 KTLNRDVDIV IANWYDNSSS VLNDKKKQYR GIQVYDKDNN SKCSPDYPFL SIYRINEKNS 241 NTNGRLKKMI RFLKNIKIDS ELDIQLSSFD INAICYQIDK SLYISKNKYE LIEVIFNQLN 301 SLAHNINYLE NLKSVDEREY IFRGKESKIN SLILLLLKEV YSILEDLKKE DIL //