LOCUS       AFI87898.1               724 aa    PRT              BCT 27-JUN-2016
DEFINITION  Aggregatibacter actinomycetemcomitans D7S-1 DNA-dependent
            helicase II protein.
ACCESSION   CP003496-1830
PROTEIN_ID  AFI87898.1
SOURCE      Aggregatibacter actinomycetemcomitans D7S-1
  ORGANISM  Aggregatibacter actinomycetemcomitans D7S-1
            Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Aggregatibacter.
REFERENCE   1  (bases 1 to 2308962)
  AUTHORS   Chen,C., Kittichotirat,W., Chen,W., Downey,J.S., Si,Y. and
            Bumgarner,R.
  TITLE     Genome sequence of naturally competent Aggregatibacter
            actinomycetemcomitans serotype a strain D7S-1
  JOURNAL   J. Bacteriol. 192 (10), 2643-2644 (2010)
   PUBMED   20348265
REFERENCE   2  (bases 1 to 2308962)
  AUTHORS   Kittichotirat,W., Bumgarner,R.E. and Chen,C.
  TITLE     Evolutionary Divergence of Aggregatibacter actinomycetemcomitans
  JOURNAL   J. Dent. Res. 95 (1), 94-101 (2016)
   PUBMED   26420795
REFERENCE   3  (bases 1 to 2308962)
  AUTHORS   Chen,C., Kittichotirat,W., Chen,W., Downey,J., Si,Y. and
            Baumgarner,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAR-2010) Microbiology, University of Washington, 960
            Republican St. Rosen Building, Seattle, WA 98109, USA
REFERENCE   4  (bases 1 to 2308962)
  AUTHORS   Kittichotirat,W., Bumgarner,R. and Chen,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-APR-2012) Department of Microbiology, University of
            Washington, 960 Republican St. Rosen Building, Seattle, WA 98109,
            USA
REFERENCE   5  (bases 1 to 2308962)
  AUTHORS   Kittichotirat,W., Bumgarner,R. and Chen,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2014) Division of Periodontolology, Herman Ostrow
            School of Dentistry, University of Southern Californak, 925 W. 34th
            Street, Los Angeles, CA 90089, USA
  REMARK    Sequence update by submitter
COMMENT     On Jun 27, 2016 this sequence version replaced CP003496.1.
            Source of DNA for this strain is available from: Casey Chen,
            Division of Primary Oral Health Care, USC School of Dentistry, 925
            W 34th Street, Los Angeles, CA 90089-0641.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 24-MAY-2014
            Assembly Method       :: 454 Newbler assembler v. 2.0.00.22
            Assembly Name         :: AaD7S-1v2.0
            Genome Coverage       :: 17.58x
            Sequencing Technology :: 454 Illumina MiSeq
            ##Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 07/17/2014 13:42:00
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 2.6 (rev. 440435)
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 2,197
            CDS                          :: 2,041
            Pseudo Genes                 :: 83
            CRISPR Arrays                :: 3
            rRNAs                        :: 19 (5S, 16S, 23S)
            tRNAs                        :: 53
            ncRNA                        :: 1
            Frameshifted Genes           :: 69
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Aggregatibacter actinomycetemcomitans D7S-1"
                     /mol_type="genomic DNA"
                     /strain="D7S-1"
                     /db_xref="taxon:694569"
     protein         /gene="uvrD"
                     /locus_tag="D7S_02188"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_005704070.1"
                     /note="unwinds DNA duplexes with 3' to 5' polarity with
                     respect to the bound strand and initiates unwinding most
                     effectively when a single-stranded region is present;
                     involved in the post-incision events of nucleotide
                     excision repair and methyl-directed mismatch repair;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MDFAELLDGL NDKQREAVSA PLGNYLVLAG AGSGKTRVLT HRIAWLIGVE GISEGSIMAV
       61 TFTNKAAAEM RHRIESVLSD GNQRLFGMWV GTFHSIAHRL LRAHHLDADL PQDFQILDSE
      121 DQLRLIKRLM KLHNFEEKSF PPKQACWYIN NKKDEGLRPN HIDDHNDRQE QEWIKIYQIY
      181 QDACDRAGLV DFAEILLRSY ELFLHKPLIL QRYQQRFQHI LVDEFQDTNK IQYEWIRLLA
      241 GKTGDVMIVG DDDQSIYGWR GAKIENIQLF LKDFANAQTI RLEQNYRSTM NILQAANELI
      301 ANNSNRLGKN LWSEGNQGEP VGIYAAFNEL DEALFVASQI KTWIEDGGKL NDCAILYRSN
      361 SQSRVIEEAL IRSQIPYRIY GGMRFFERQE IKDALAYLRL IANRQDDAAF ERVINTPPRG
      421 IGDRTLDTLR NLTREHQITL WQAINLALQE NKLARRAATA LLRFMELINS LQRDTEEMPL
      481 FAQTDFVIKH SGLYQMYKQE KGEKGEVRIE NLEELVSAAR EFIKPEDAED MTDLTAFLTH
      541 ASLEAGEEQA APHQACVEMM TLHSVKGLEF PRVFMIGVEE GLFPSFRSFE EAGRLEEERR
      601 LAYVGITRAK QKLTISYAES RRLYGKEERH LPSRFITELP QQCLQEIRLR GTVTRALNQA
      661 KIGSVAPVLS ESVWKMGQKV KHEKFGFGTV INVEGADNNL RLQIAFQNQG IKWLIAHLAK
      721 LEKV
//