LOCUS AFI87898.1 724 aa PRT BCT 27-JUN-2016 DEFINITION Aggregatibacter actinomycetemcomitans D7S-1 DNA-dependent helicase II protein. ACCESSION CP003496-1830 PROTEIN_ID AFI87898.1 SOURCE Aggregatibacter actinomycetemcomitans D7S-1 ORGANISM Aggregatibacter actinomycetemcomitans D7S-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter. REFERENCE 1 (bases 1 to 2308962) AUTHORS Chen,C., Kittichotirat,W., Chen,W., Downey,J.S., Si,Y. and Bumgarner,R. TITLE Genome sequence of naturally competent Aggregatibacter actinomycetemcomitans serotype a strain D7S-1 JOURNAL J. Bacteriol. 192 (10), 2643-2644 (2010) PUBMED 20348265 REFERENCE 2 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R.E. and Chen,C. TITLE Evolutionary Divergence of Aggregatibacter actinomycetemcomitans JOURNAL J. Dent. Res. 95 (1), 94-101 (2016) PUBMED 26420795 REFERENCE 3 (bases 1 to 2308962) AUTHORS Chen,C., Kittichotirat,W., Chen,W., Downey,J., Si,Y. and Baumgarner,R. TITLE Direct Submission JOURNAL Submitted (01-MAR-2010) Microbiology, University of Washington, 960 Republican St. Rosen Building, Seattle, WA 98109, USA REFERENCE 4 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R. and Chen,C. TITLE Direct Submission JOURNAL Submitted (23-APR-2012) Department of Microbiology, University of Washington, 960 Republican St. Rosen Building, Seattle, WA 98109, USA REFERENCE 5 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R. and Chen,C. TITLE Direct Submission JOURNAL Submitted (18-JUL-2014) Division of Periodontolology, Herman Ostrow School of Dentistry, University of Southern Californak, 925 W. 34th Street, Los Angeles, CA 90089, USA REMARK Sequence update by submitter COMMENT On Jun 27, 2016 this sequence version replaced CP003496.1. Source of DNA for this strain is available from: Casey Chen, Division of Primary Oral Health Care, USC School of Dentistry, 925 W 34th Street, Los Angeles, CA 90089-0641. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 24-MAY-2014 Assembly Method :: 454 Newbler assembler v. 2.0.00.22 Assembly Name :: AaD7S-1v2.0 Genome Coverage :: 17.58x Sequencing Technology :: 454 Illumina MiSeq ##Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/17/2014 13:42:00 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 2.6 (rev. 440435) Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 2,197 CDS :: 2,041 Pseudo Genes :: 83 CRISPR Arrays :: 3 rRNAs :: 19 (5S, 16S, 23S) tRNAs :: 53 ncRNA :: 1 Frameshifted Genes :: 69 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Aggregatibacter actinomycetemcomitans D7S-1" /mol_type="genomic DNA" /strain="D7S-1" /db_xref="taxon:694569" protein /gene="uvrD" /locus_tag="D7S_02188" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_005704070.1" /note="unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair; Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MDFAELLDGL NDKQREAVSA PLGNYLVLAG AGSGKTRVLT HRIAWLIGVE GISEGSIMAV 61 TFTNKAAAEM RHRIESVLSD GNQRLFGMWV GTFHSIAHRL LRAHHLDADL PQDFQILDSE 121 DQLRLIKRLM KLHNFEEKSF PPKQACWYIN NKKDEGLRPN HIDDHNDRQE QEWIKIYQIY 181 QDACDRAGLV DFAEILLRSY ELFLHKPLIL QRYQQRFQHI LVDEFQDTNK IQYEWIRLLA 241 GKTGDVMIVG DDDQSIYGWR GAKIENIQLF LKDFANAQTI RLEQNYRSTM NILQAANELI 301 ANNSNRLGKN LWSEGNQGEP VGIYAAFNEL DEALFVASQI KTWIEDGGKL NDCAILYRSN 361 SQSRVIEEAL IRSQIPYRIY GGMRFFERQE IKDALAYLRL IANRQDDAAF ERVINTPPRG 421 IGDRTLDTLR NLTREHQITL WQAINLALQE NKLARRAATA LLRFMELINS LQRDTEEMPL 481 FAQTDFVIKH SGLYQMYKQE KGEKGEVRIE NLEELVSAAR EFIKPEDAED MTDLTAFLTH 541 ASLEAGEEQA APHQACVEMM TLHSVKGLEF PRVFMIGVEE GLFPSFRSFE EAGRLEEERR 601 LAYVGITRAK QKLTISYAES RRLYGKEERH LPSRFITELP QQCLQEIRLR GTVTRALNQA 661 KIGSVAPVLS ESVWKMGQKV KHEKFGFGTV INVEGADNNL RLQIAFQNQG IKWLIAHLAK 721 LEKV //