LOCUS AFI87868.1 962 aa PRT BCT 27-JUN-2016 DEFINITION Aggregatibacter actinomycetemcomitans D7S-1 2-oxoglutarate dehydrogenase protein. ACCESSION CP003496-1800 PROTEIN_ID AFI87868.1 SOURCE Aggregatibacter actinomycetemcomitans D7S-1 ORGANISM Aggregatibacter actinomycetemcomitans D7S-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter. REFERENCE 1 (bases 1 to 2308962) AUTHORS Chen,C., Kittichotirat,W., Chen,W., Downey,J.S., Si,Y. and Bumgarner,R. TITLE Genome sequence of naturally competent Aggregatibacter actinomycetemcomitans serotype a strain D7S-1 JOURNAL J. Bacteriol. 192 (10), 2643-2644 (2010) PUBMED 20348265 REFERENCE 2 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R.E. and Chen,C. TITLE Evolutionary Divergence of Aggregatibacter actinomycetemcomitans JOURNAL J. Dent. Res. 95 (1), 94-101 (2016) PUBMED 26420795 REFERENCE 3 (bases 1 to 2308962) AUTHORS Chen,C., Kittichotirat,W., Chen,W., Downey,J., Si,Y. and Baumgarner,R. TITLE Direct Submission JOURNAL Submitted (01-MAR-2010) Microbiology, University of Washington, 960 Republican St. Rosen Building, Seattle, WA 98109, USA REFERENCE 4 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R. and Chen,C. TITLE Direct Submission JOURNAL Submitted (23-APR-2012) Department of Microbiology, University of Washington, 960 Republican St. Rosen Building, Seattle, WA 98109, USA REFERENCE 5 (bases 1 to 2308962) AUTHORS Kittichotirat,W., Bumgarner,R. and Chen,C. TITLE Direct Submission JOURNAL Submitted (18-JUL-2014) Division of Periodontolology, Herman Ostrow School of Dentistry, University of Southern Californak, 925 W. 34th Street, Los Angeles, CA 90089, USA REMARK Sequence update by submitter COMMENT On Jun 27, 2016 this sequence version replaced CP003496.1. Source of DNA for this strain is available from: Casey Chen, Division of Primary Oral Health Care, USC School of Dentistry, 925 W 34th Street, Los Angeles, CA 90089-0641. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 24-MAY-2014 Assembly Method :: 454 Newbler assembler v. 2.0.00.22 Assembly Name :: AaD7S-1v2.0 Genome Coverage :: 17.58x Sequencing Technology :: 454 Illumina MiSeq ##Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/17/2014 13:42:00 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 2.6 (rev. 440435) Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 2,197 CDS :: 2,041 Pseudo Genes :: 83 CRISPR Arrays :: 3 rRNAs :: 19 (5S, 16S, 23S) tRNAs :: 53 ncRNA :: 1 Frameshifted Genes :: 69 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Aggregatibacter actinomycetemcomitans D7S-1" /mol_type="genomic DNA" /strain="D7S-1" /db_xref="taxon:694569" protein /locus_tag="D7S_02158" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_005595069.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MPFKCNGIFY VVAMTLFVSV FIFKVVFMQH NSLQEWLASS ALGGANQAYI EELYESYLEE 61 PGSVDSSWQA IFKTLPKSTA LEQPHSVVRD YFRRLARENH SQSIAVIDPE ASAKLVKVLQ 121 FINAYRSRGY IEATLDPLNY YRWKTSSVPE LDYHQHGLTD ADLDESFNID YAVYGKETIK 181 LSELAHDLKA TYCGNIGLEF MHIHDMEQRN WLQNKQEKWI QQPLFTKDEK VNLLKELTAA 241 DGLERYLGAK FPGAKRFSLE GSDAFIPMMK EIIRHAGRND IDDIVIGMAH RGRLNMLVNV 301 LGKKPAELFD EFAGKHAETN RTGDVKYHQG FSSDFAVDDK RVHLTLAFNP SHLEIVSPVV 361 IGSVRARQTR KQDLEHNQVL AVTVHGDSAV AGQGIVQETL NMSNARGYKV GGTIRIVINN 421 QIGFTTSNPN DTRSTEFCTD IAKMIQAPII HVNGDDPEAV AFAARMAVEY RNAFKRDIFI 481 DLISYRRHGH NEADEPLATQ PMMYGIIKKH PTPPKVYAAR LIQEVTISEE DATEMTNLYR 541 DALDNGECVV PEWRAMDMAK VDWLQYLNYD WTAPYESHFP LDRFQTLAKR VSHYPDYVQP 601 HPRVEKIYAD RKEMAQGDKL LDWGMAETMA YATLLDEGIH VRLSGEDAGR GTFFHRHAVV 661 HNQKDGTGYV PLTQLHANQG RFEVWDSVLT EEGVLAFEYG YATTDPKTLT IWEAQFGDFA 721 NGAQIVIDQF ISSGEQKWGR MCGLVMLLPH GYEGQGPEHS SARLERYLQL CAEQNMQVCI 781 PSTPAQVYHM LRRQAIRKMR RPLIGISPKS LLRHPLAVST MDELVNGTFQ TVIGEIDELD 841 PKQVKRVVMC SGKVYYDLLE QRRKNEQTDV AIIRIEQLYP FPHDDVKAVL APYAHVTDFV 901 WCQEEPLNQG AWYSSKHNFE AVIPEGAKLT YAGRPASASP AVGYISLHTK QQKQLVEDAL 961 TR //